PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00219A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 337aa    MW: 36816.1 Da    PI: 6.4534
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00219AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.2e-18112165356
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  Oropetium_20150105_00219A 112 KKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWK 165
                                4568999**********************************************9 PP
2HD-ZIP_I/II127.84.5e-41111201191
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                ekkrrl+ eqv++LE++Fe  +kLeperK +lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr++da+k++n++L +++
  Oropetium_20150105_00219A 111 EKKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQLDAVKADNDALLSHN 194
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLreel 91 
                                ++L++e+
  Oropetium_20150105_00219A 195 KKLQAEI 201
                                ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-1892168IPR009057Homeodomain-like
SuperFamilySSF466891.97E-19103169IPR009057Homeodomain-like
PROSITE profilePS5007117.346107167IPR001356Homeobox domain
SMARTSM003891.3E-17110171IPR001356Homeobox domain
CDDcd000867.00E-17112168No hitNo description
PfamPF000463.3E-15112165IPR001356Homeobox domain
PRINTSPR000311.6E-5138147IPR000047Helix-turn-helix motif
PROSITE patternPS000270142165IPR017970Homeobox, conserved site
PRINTSPR000311.6E-5147163IPR000047Helix-turn-helix motif
PfamPF021831.9E-14167206IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MRPMASNGMA SSPSSFFPPN FLLQMQQTPP DHDSQEHHLL PPPPLHPHHN PFLPSSQQCP  60
SLQDFRGMSP MLGKRPIYGP DVVGGDELNG DGGGGGANED ELSDDGSQAG EKKRRLNVEQ  120
VRTLEKNFEL GNKLEPERKL QLARALGLQP RQVAIWFQNR RARWKTKQLE KDYDVLKRQL  180
DAVKADNDAL LSHNKKLQAE ILALKGGREA GSEQINLNKE TEASCSNRSE NSSEINLDIS  240
RTPPTESPMD PPAHHQHAGN GCGGVGMIPF YPSVGRPTGI GIDQLLHSTS GPKMEQHGGN  300
GGGCVQAPET ASFGNLLCGV DEQPPFWPWA DHQHFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159167RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_00219A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9664901e-170EU966490.1 Zea mays clone 294849 homeobox-leucine zipper protein HAT7 mRNA, complete cds.
GenBankKJ7285061e-170KJ728506.1 Zea mays clone pUT6811 HB transcription factor (HB102) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465782.10.0homeobox-leucine zipper protein HOX21
SwissprotQ8S7W91e-144HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA0A3L6SDB50.0A0A3L6SDB5_PANMI; Uncharacterized protein
STRINGPavir.Ia04323.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.17e-80HD-ZIP family protein