PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_00181A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

C2H2

Protein Properties

Length: 1519aa MW: 170395 Da PI: 6.2882

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_00181A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00038	375	397	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ C k+F + ++L+ H++ H Oropetium_20150105_00181A 375 MCGRCRKRFADAESLQWHLMHeH 397 7*****************99777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04781	6.0E-25	42	150	IPR006866	Domain of unknown function DUF627, N-terminal
Pfam	PF04780	3.1E-148	312	803	IPR006865	Domain of unknown function DUF629
PROSITE profile	PS50157	10.159	374	402	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	376	397	IPR007087	Zinc finger, C2H2
SuperFamily	SSF54001	2.55E-34	1190	1515	No hit	No description
PROSITE profile	PS50235	21.85	1190	1517	IPR028889	Ubiquitin specific protease domain
Pfam	PF00443	6.6E-22	1191	1494	IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase
CDD	cd02257	5.87E-14	1280	1515	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016579	Biological Process	protein deubiquitination
GO:0036459	Molecular Function	thiol-dependent ubiquitinyl hydrolase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1519 aa Download sequence Send to blast
MGRKKRTPAP NPTPPPSDGP RRPAAGGGGG GDEAAVRAEV DRALACLQRG NHARALRVMK 60 DAVARHGEGS PLLLRAHGTV YSRAASVLDD PAARARHHKS ALQAARRAVD LAPDSVELAH 120 FHAMLLYEAA PDSCAYEDVI AECERGLSIE EPADPAPHSL RLPPADLDQV QSELRNLMQK 180 ANISSISNWV KTLGGGDDKL RLIPVRRLSD EPVESRLVPS APSPRRTNEI KKATKTPEER 240 RQEIEVRLAA LRLLQQQQSN GAVTTDSASS RSQGDEAPSS SSQSSAGGHR ADRRKGGSRK 300 ATTSSAPDRM DQVRAFWGSL SVERRLAFLI TSISELKAHY ASGMHKDKEV VSAAADVLDD 360 ALGFAFKSGK WEFWMCGRCR KRFADAESLQ WHLMHEHVGV LPHRLQDMLP QEIDADWEAM 420 LIDWNWKPLD AAAALKVLEE EQLDNLGLDK DKDSMSSDNW SIRDKSDTSE SSASPHDQEC 480 DSFWLVLREG DRKWPLSDDD EKSKILERIQ SSFHILVKNK NLSLSSLNRV IQFAIDELRG 540 MPSGSLLLNH SLDDSPLCIC FLEASSLRKI LKFLQDLMQS SGLSRQLEKD EGLGDGDSFP 600 KYNDTLEKVI LNPDSSELTI DCQSFRRKFD SENVDTDALL SWLYAGSSVG EQLLSWNRMR 660 DERSNQSLDL LRALEREFNN LKNLCERKHE HLRNEEGLLA VENLFFEERR RREQMGQYAF 720 QRYEELLRKR QDELLERNGE ELFNGKSSEL DAVSAILKEV QTSHFGYDEP FSGMAPRLCD 780 FGAEEDEWGL HAFAHPSDSM VEIAVSKMKE QIAMEISKVD SRIMRNVAVL KQLEHKIGPA 840 SALDYRTILL PLMKYYLQSR LELLVDKDAR ERSDAAQEAF LAELALDAKK NASKAGDMKQ 900 SRDKPKDKKK FKDLRRSKDL KDSNCSEQYR QDSADEETTE KFEIHAGDDF DSKLSTSDYY 960 FNEQEEEHRH RLQLEAEERK LEETLNYQRW IEEEAKQKHL AEQLRSTYAS SVIGGAARPK 1020 TADLIRDQDN CEHAPNNSSP AYLEGIKFGD FCFSEGSLRE EHSSSALHDM NQLQNAENSL 1080 KGKQNGWNSP GAKTLTTNDM DIKLTLNVNG VWKNTQPIKH TSSSGTQRSK KSTSEPQKKY 1140 AQGVPGAIYD DDRASGPHSN MPAPRCSTSG YDVYAADTTN TSNGKEVYGA GLKNAAGEYN 1200 CFLNVIIQSL WHIRRFRDEF LKTSAMHKHV GEPCAVCALY EIFIELSKAE KGQGEVVAPS 1260 SLRIALSKSY PNNKFFQEGQ MNDASEVLGV IFECLHKSYA SRAVFHGKSD KTNSIGSWDC 1320 ANSACIAHRL FGLDIYERMN CHSCKLESRR LMYTSFFHNI NASSLRTAKM MCPEYSFDEL 1380 LKVVAMNDQL ACDKDVGGCG KPNHIHHILS SSPHTFTVVL GWQNSKENVD DICATLAGIS 1440 TEIDISIFYR GLDHGSKHTL VSVVCYYGQH YHCFAFKDGR WVMYDDQTVK VIGSWGDVLV 1500 MCEKGHLQPQ VLFFEGGK*

Sequence ? help Back to Top

Protein Sequence Length: 1519 aa Download sequence Send to blast

MGRKKRTPAP NPTPPPSDGP RRPAAGGGGG GDEAAVRAEV DRALACLQRG NHARALRVMK  60
DAVARHGEGS PLLLRAHGTV YSRAASVLDD PAARARHHKS ALQAARRAVD LAPDSVELAH  120
FHAMLLYEAA PDSCAYEDVI AECERGLSIE EPADPAPHSL RLPPADLDQV QSELRNLMQK  180
ANISSISNWV KTLGGGDDKL RLIPVRRLSD EPVESRLVPS APSPRRTNEI KKATKTPEER  240
RQEIEVRLAA LRLLQQQQSN GAVTTDSASS RSQGDEAPSS SSQSSAGGHR ADRRKGGSRK  300
ATTSSAPDRM DQVRAFWGSL SVERRLAFLI TSISELKAHY ASGMHKDKEV VSAAADVLDD  360
ALGFAFKSGK WEFWMCGRCR KRFADAESLQ WHLMHEHVGV LPHRLQDMLP QEIDADWEAM  420
LIDWNWKPLD AAAALKVLEE EQLDNLGLDK DKDSMSSDNW SIRDKSDTSE SSASPHDQEC  480
DSFWLVLREG DRKWPLSDDD EKSKILERIQ SSFHILVKNK NLSLSSLNRV IQFAIDELRG  540
MPSGSLLLNH SLDDSPLCIC FLEASSLRKI LKFLQDLMQS SGLSRQLEKD EGLGDGDSFP  600
KYNDTLEKVI LNPDSSELTI DCQSFRRKFD SENVDTDALL SWLYAGSSVG EQLLSWNRMR  660
DERSNQSLDL LRALEREFNN LKNLCERKHE HLRNEEGLLA VENLFFEERR RREQMGQYAF  720
QRYEELLRKR QDELLERNGE ELFNGKSSEL DAVSAILKEV QTSHFGYDEP FSGMAPRLCD  780
FGAEEDEWGL HAFAHPSDSM VEIAVSKMKE QIAMEISKVD SRIMRNVAVL KQLEHKIGPA  840
SALDYRTILL PLMKYYLQSR LELLVDKDAR ERSDAAQEAF LAELALDAKK NASKAGDMKQ  900
SRDKPKDKKK FKDLRRSKDL KDSNCSEQYR QDSADEETTE KFEIHAGDDF DSKLSTSDYY  960
FNEQEEEHRH RLQLEAEERK LEETLNYQRW IEEEAKQKHL AEQLRSTYAS SVIGGAARPK  1020
TADLIRDQDN CEHAPNNSSP AYLEGIKFGD FCFSEGSLRE EHSSSALHDM NQLQNAENSL  1080
KGKQNGWNSP GAKTLTTNDM DIKLTLNVNG VWKNTQPIKH TSSSGTQRSK KSTSEPQKKY  1140
AQGVPGAIYD DDRASGPHSN MPAPRCSTSG YDVYAADTTN TSNGKEVYGA GLKNAAGEYN  1200
CFLNVIIQSL WHIRRFRDEF LKTSAMHKHV GEPCAVCALY EIFIELSKAE KGQGEVVAPS  1260
SLRIALSKSY PNNKFFQEGQ MNDASEVLGV IFECLHKSYA SRAVFHGKSD KTNSIGSWDC  1320
ANSACIAHRL FGLDIYERMN CHSCKLESRR LMYTSFFHNI NASSLRTAKM MCPEYSFDEL  1380
LKVVAMNDQL ACDKDVGGCG KPNHIHHILS SSPHTFTVVL GWQNSKENVD DICATLAGIS  1440
TEIDISIFYR GLDHGSKHTL VSVVCYYGQH YHCFAFKDGR WVMYDDQTVK VIGSWGDVLV  1500
MCEKGHLQPQ VLFFEGGK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	707	712	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_00181A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001347488.1	0.0	uncharacterized protein LOC100274180
TrEMBL	A0A1E5W0Z4	0.0	A0A1E5W0Z4_9POAL; Inactive ubiquitin carboxyl-terminal hydrolase 53
STRING	GRMZM2G178120_P01	0.0	(Zea mays)

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_00181A