PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00178A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family TALE
Protein Properties Length: 573aa    MW: 61729.4 Da    PI: 6.5885
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00178AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.31.3e-083443811954
                                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                Fe   ++yp+ +e+  LA+++gL+  qV++WF N R +
  Oropetium_20150105_00178A 344 FEHflHPYPKDSEKLMLARQTGLSRGQVSNWFINARVR 381
                                554459******************************88 PP
2BELL109.61.9e-35207278172
                       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                erq+lq+k + L+ ll++Vd++Y++y++q+q+v+s+F+avag g+a+pYt+lAl++iSrhFr+L+dai  q+
  Oropetium_20150105_00178A 207 ERQDLQNKVSALMALLDQVDRKYRHYHHQMQMVMSAFDAVAGAGAARPYTALALQTISRHFRSLRDAIGAQV 278
                                799*****************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.3E-50132276IPR006563POX domain
PfamPF075261.8E-48139274IPR006563POX domain
PROSITE profilePS5007112.001322385IPR001356Homeobox domain
SMARTSM003891.7E-9325389IPR001356Homeobox domain
CDDcd000863.10E-12325386No hitNo description
SuperFamilySSF466894.28E-17326392IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-27328391IPR009057Homeodomain-like
PfamPF059204.4E-17342381IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MATFFSTSTE HRDLTVGGGS MSYHQYNASN SYPDSTTAGG LIPLPASIIQ QGHGGNGXXX  60
XXXXXXXXXE GPAEMGLQTT QLLMENNASA GQSQGLSLSL GSQGVPVSLY QQYRPAGASL  120
LSPNQSTAAI RNAQSNIYIQ NSRYLKAARE LLDEVVNVRD AIKRKADKNQ SKDNSGECKD  180
AENKGEEKAG GGEHEGNSAA PELTAAERQD LQNKVSALMA LLDQVDRKYR HYHHQMQMVM  240
SAFDAVAGAG AARPYTALAL QTISRHFRSL RDAIGAQVQT LRRSLGEKDT SSGGGLARLR  300
YIDQHLRQQR AMQQFGMMQQ PQHAWRPQRG LPESAVSVLR AWLFEHFLHP YPKDSEKLML  360
ARQTGLSRGQ VSNWFINARV RLWKPMIEEM YKEEFGAEMD SHSSSENAGN NKGKDEAISS  420
EDHDEFQSPS SIAAKHGGGA GHQFNTFKSE AIGGMDNAGG VGVGLSSLDG AAMGTYATSL  480
NLSHHAPVGT GLLQDARFVT YGGDMAGHLG GGYDGGNVSL TLGLQHCNDA GTVPGEQQGL  540
LYGNTADFEF MNGGGEDRQR FGSSHLLHDF VA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A2e-17331389159Homeobox protein Meis2
5bng_B2e-17331389159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_00178A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0560460.0BT056046.1 Zea mays full-length cDNA clone ZM_BFc0159G01 mRNA, complete cds.
GenBankKJ7284970.0KJ728497.1 Zea mays clone pUT6802 HB transcription factor (HB64) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465808.10.0BEL1-like homeodomain protein 7
RefseqXP_021307660.10.0BEL1-like homeodomain protein 7
TrEMBLA0A1E5W1C90.0A0A1E5W1C9_9POAL; BEL1-like homeodomain protein 7
STRINGSb01g046170.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.14e-95BEL1-like homeodomain 7