PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00099A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 1482aa    MW: 163418 Da    PI: 6.2241
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00099AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.001113711396123
                                 EEET..TTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                                 ++C    C++ F ++ +L+ H r+ +
  Oropetium_20150105_00099A 1371 FQCDidLCDMNFETRAELNAHKRNiC 1396
                                 899999****************9877 PP
2zf-C2H214.40.0001113961418323
                                 ET..TTTEEESSHHHHHHHHHHT CS
                    zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                                 C+   Cgk+Fs++ +LkrH+ +H
  Oropetium_20150105_00099A 1396 CTdeSCGKRFSSHKYLKRHQVVH 1418
                                 77778***************988 PP
3zf-C2H213.20.0002614541480123
                                 EEET..TTTEEESSHHHHHHHHHH..T CS
                    zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                                 ykC+  dCg++F+  s++ rH ++  H
  Oropetium_20150105_00099A 1454 YKCSapDCGQTFRYVSDYSRHRKKfnH 1480
                                 99********************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005455.7E-122566IPR003349JmjN domain
PROSITE profilePS5118313.5922667IPR003349JmjN domain
PfamPF023754.3E-132760IPR003349JmjN domain
SMARTSM005582.4E-50221390IPR003347JmjC domain
PROSITE profilePS5118435.218221390IPR003347JmjC domain
SuperFamilySSF511973.3E-28224387No hitNo description
PfamPF023731.1E-37254373IPR003347JmjC domain
SMARTSM003557013711393IPR015880Zinc finger, C2H2-like
SMARTSM003550.1113941418IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.63213941423IPR007087Zinc finger, C2H2
PROSITE patternPS00028013961418IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-614001424IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.68E-1514051457No hitNo description
SMARTSM003550.001114241448IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.19614241453IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.8E-1014251448IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014261448IPR007087Zinc finger, C2H2
SuperFamilySSF576675.75E-614481477No hitNo description
Gene3DG3DSA:3.30.160.603.5E-1014491476IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.28114541481IPR007087Zinc finger, C2H2
SMARTSM003550.1214541480IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014561480IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1482 aa     Download sequence    Send to blast
MSPPAVGPSR PGEIPVPAWL HGLPRAPEYR PTESEFADPI AFLSRVEREA AAYGICKVIP  60
PYQRPSRRFV FSHLNRSLVS ASSDAANPGS SDPSNTASSR AESAAVFTTR HQELGTPRRG  120
RPPPQVLKQV WQSGEHYTLE QFEAKSRAFS KSYLAGIRDP TPLEVESLFW KASEDRPIYI  180
EYANDVPGSG FAASEQSQRQ KKRRREGDTV ADDGEKGSGW RLSGSPWNLQ AIARAPGSLT  240
RFMPDDVPGV TSPMVYIGML FSWFAWHVED HELHSLNFLH TGAPKTWYAV PGDHSAELEE  300
VIRVHGYGAN SDRLASLAVL GEKTTLMSPE VLVSRGVPCC RLVQYPGEFV VTFPRAYHVG  360
FSHGFNCGEA ANFATPQWLK YAKEAAVRRA VMNYLPMLSH QQLLYLLAVS FIPRTPRVLS  420
GIRTSRLRDR RKEDRELLVK QEFLLDMISE NKLLCSFLQK KSIDNVVLWE PDLLPSSASC  480
SSGSKAPEKK SEGGYRIESL PCSNKDSSSD GTACMNGAQS ECMSIDSKSS YATSASEEEQ  540
PKAEADDEGG LPFDLNIDSG SLTCVACGIL GFPFMAILQP SREALERISN VHGKQARENC  600
NKGSSIVPPR CPTDDNSGSS SIPNDPSSFA EQNVNSQRSN VCLMDNGHDG SLQQHTNCLH  660
SCCFENVHCL CSKEKSDNIP ADSLGSEQSG RCDIHAQAFD NCENTVTWNT NCTFARPRIF  720
CLQHALEIEK MFEGKGGVHA LIICHSDYTK LKALAISVAE EIEFQFDCTD VPLANASKSD  780
LHLINISIDD EGHEEDGTDW TSQMGLNLKY FAKLRKERSG NQEQPPLSFW GLFSNQSPTS  840
GIPNLKWFCR KARTPYKVIG VISNSGAKTA VKVGCEDTIT KIGGFGNFCK GDSQQSLQQC  900
GPQQSNGLQG SDDIANMHLR AEDDDNKHCL VNIPISLAEY PMMHQVCEGP VSVNTCDETI  960
YSSDSQDSPP LADSPEAIRD QECLLSTEQS NSTGISVQKL NGDGSFVMEG STNCLSSHEF  1020
LQSLNSTLRC RDEQLPVQQD QEVTRLCNNL NRNSVVPCLI EDLVSEEKRG DTMSATLENE  1080
DGCAETCCLD TVTKSNKSAS DNQPKACDFD AISVKQKSSL SEKICGADQQ CSLTFACLGS  1140
ADVHDSTEPM SPYGLTSDEL QVDTVHSTIK SVKLKGISLG NFKHESPEEE HVRAAFVTVI  1200
PEEGGQSISN GSNTFDILLG AVAEESKIVD APGKDEIGKA SLALMTLASN DQPSAEITEG  1260
NVVNITKKDT LSGVKEHGPQ IHQSREFQLP DLVSRSIGRS SRTDIICYVR RKHKRKRESK  1320
SNTDTSCIAG SFARSPCESL RPRTRPAVVE EMLTVEPSTA RKGKRRKMGS FQCDIDLCDM  1380
NFETRAELNA HKRNICTDES CGKRFSSHKY LKRHQVVHSE MRPLKCPWDG CGMTFKWLWA  1440
QTEHVRVHTG ERPYKCSAPD CGQTFRYVSD YSRHRKKFNH Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A8e-73194048346Transcription factor jumonji (Jmj) family protein
6ip4_A8e-73194048346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
113091315RRKHKRK
213101317RKHKRKRE
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_00099A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985676.10.0lysine-specific demethylase SE14
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLK4A4T20.0K4A4T2_SETIT; Uncharacterized protein
STRINGSi033886m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein