PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote238047090011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 676aa MW: 75998.9 Da PI: 6.4239 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.2 | 6.5e-23 | 127 | 226 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 f+k+lt sd++++g +++ +k+a+e+ + +++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L + Ote238047090011|238047090011 127 FCKILTASDTSTHGGFSVLRKHANEClppldMTQPTPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVA 207 99****************************9666677789***************************************** PP T-EEEEEE-SSSEE..EEEEE CS B3 77 gDfvvFkldgrsefelvvkvf 97 gD +vF + +++el+v+v+ Ote238047090011|238047090011 208 GDCFVFL--RGDNGELRVGVR 226 *******..348899999997 PP | |||||||
2 | Auxin_resp | 103.1 | 3.5e-34 | 253 | 332 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrs 81 a+ha++t++ F v+Y+Pr+ s+F++ ++k+++++++ +svGmRfkm+fe+eds+err++Gt+vg++d+++ +W++S Wrs Ote238047090011|238047090011 253 ASHAITTQTLFVVYYKPRT--SQFIIGLNKYLESMQHGFSVGMRFKMRFEGEDSPERRFTGTIVGIEDFSS-QWTESAWRS 330 789***************6..9**********************************************888.********* PP Auxin_resp 82 Lk 83 Lk Ote238047090011|238047090011 331 LK 332 96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.19E-39 | 121 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-38 | 123 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.07E-20 | 125 | 226 | No hit | No description |
Pfam | PF02362 | 1.2E-20 | 127 | 226 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.646 | 127 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-19 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.9E-32 | 253 | 332 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.8E-6 | 517 | 572 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.8E-15 | 529 | 612 | No hit | No description |
PROSITE profile | PS51745 | 29.003 | 536 | 628 | IPR000270 | PB1 domain |
Pfam | PF02309 | 4.4E-8 | 582 | 626 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 676 aa Download sequence Send to blast |
MAHADGLVGG GSHERGVGGD DLYTELWKAC AGPLVDVPCM RERVYYFPQG HMEQLEASTN 60 QELDQHIPRF NLPPKILCRV VYMQLLAEPE TDEVYAQITL QPEPDQTEPM SPDPSPPDPP 120 KVAVHSFCKI LTASDTSTHG GFSVLRKHAN ECLPPLDMTQ PTPTQDLVAK DLHGYEWRFK 180 HIFRGQPRRH LLTTGWSTFV TSKRLVAGDC FVFLRGDNGE LRVGVRHLAR HQSSMPPSVI 240 SSQSMHLGVL ATASHAITTQ TLFVVYYKPR TSQFIIGLNK YLESMQHGFS VGMRFKMRFE 300 GEDSPERRFT GTIVGIEDFS SQWTESAWRS LKVQWDEPAT IMRPDRVSPW EIEPFVASTS 360 VDASQPAMKI KRPRPLDLPL NETTTASTAS PIWYPKSTTS VEMSHLTSTN DVQSGETQVF 420 WPPKHPIGVW PSVSNGSLSL FREDDNKNVL LQSVLPNYHS PVSSRASNCL DPIRKSETAS 480 ACRLFGFDLR NSSNKINQAE KESPPKMSET DGKERKDVQM EAPANEGKQS FVPSSRTRIK 540 VQMQGIAVGR GMDLSSFRGY DDLIAELENM FDIKGELRPR NKWEVVYTDN EGDMMLVGDD 600 PWQEFCKMAK KICIYSSDEV KKMSPRCKLP LSSTDGEGTX XXXXXXXXXX XXXXXXILSS 660 AFFLSNNPSD LGYTMW |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-173 | 16 | 355 | 13 | 355 | Auxin response factor 1 |
4ldw_A | 1e-173 | 16 | 355 | 13 | 355 | Auxin response factor 1 |
4ldw_B | 1e-173 | 16 | 355 | 13 | 355 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093958.1 | 0.0 | auxin response factor 18 isoform X2 | ||||
Swissprot | Q9C5W9 | 0.0 | ARFR_ARATH; Auxin response factor 18 | ||||
TrEMBL | A0A191T8U0 | 0.0 | A0A191T8U0_SALMI; Auxin response factor | ||||
STRING | XP_009797447.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2347 | 24 | 50 |
Publications ? help Back to Top | |||
---|---|---|---|
|