PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote238018650001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 27268.1 Da    PI: 8.6058
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote238018650001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.66e-27958150
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                  k+ien   rqvtfskRr+g++KKA+EL vLC+aevaviifs+tgkl+e++
  Ote238018650001|238018650001  9 KKIENVNSRQVTFSKRRAGLFKKANELAVLCEAEVAVIIFSNTGKLFEFA 58
                                  68***********************************************8 PP
2K-box61.82.8e-218416519100
                         K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                                   +e++ Lk+eie+L+ +q +llG+dL+ ++ +eL+ Le+qL ++l  i+++K++lll+++ + + +e+++  en++Lrk++e
  Ote238018650001|238018650001  84 KEADLLKEEIEKLKLKQLRLLGKDLTGMTSQELHLLERQLSEGLMCIKERKEQLLLQELTQCKIQEQRAALENETLRKQVE 164
                                   799****************************************************************************98 PP

                         K-box 100 e 100
                                   e
  Ote238018650001|238018650001 165 E 165
                                   7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.413161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-39160IPR002100Transcription factor, MADS-box
CDDcd002651.62E-36267No hitNo description
SuperFamilySSF554554.97E-29275IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.51579169IPR002487Transcription factor, K-box
PfamPF014861.2E-1484163IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRGKIEIKK IENVNSRQVT FSKRRAGLFK KANELAVLCE AEVAVIIFSN TGKLFEFANS  60
RYKKYVETAK GVAGEPQPEP LQPKEADLLK EEIEKLKLKQ LRLLGKDLTG MTSQELHLLE  120
RQLSEGLMCI KERKEQLLLQ ELTQCKIQEQ RAALENETLR KQVEELRTFF PPSTSPTPLC  180
IDYHSSVQKS NTAVKEGSRS PDTVADEDLD TTLQLELGLS YGSSRKRKAS DGETHSSTST  240
RN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-18185192MEF2C
5f28_B9e-18185192MEF2C
5f28_C9e-18185192MEF2C
5f28_D9e-18185192MEF2C
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091774.11e-114agamous-like MADS-box protein AGL15
TrEMBLA0A067L5A59e-89A0A067L5A5_JATCU; Uncharacterized protein
STRINGMigut.N01802.1.p2e-87(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87752226