PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote237957950021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family SBP
Protein Properties Length: 132aa    MW: 14668.3 Da    PI: 10.4578
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote237957950021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP773e-241642178
                                  TT--HHHHT-S-EEETTEEEEE-TTTSSE......EETTT--SS--S-STTTT-------S--- CS
                           SBP 21 hkvCevhskapvvlvsgleqrfCqqCsrf......helsefDeekrsCrrrLakhnerrrkkqa 78
                                  hkvCe+hska++v+++gl+qrfCqqCsr       +  ++fD++krsCr+rLa+hn+rrrk+q+
  Ote237957950021|237957950021  1 HKVCEFHSKAATVIAAGLTQRFCQQCSRLsseltvYVHHHFDNGKRSCRKRLADHNRRRRKSQQ 64
                                  9***************************832222234579*********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031104.3E-16161IPR004333Transcription factor, SBP-box
PROSITE profilePS5114119.341162IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.107.5E-13149IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.22E-20165IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
HKVCEFHSKA ATVIAAGLTQ RFCQQCSRLS SELTVYVHHH FDNGKRSCRK RLADHNRRRR  60
KSQQTTNQEN TIKSHALTSS SENLPRSPPD SGPHSSSVTV AISPPRISLD CLGHRSYTTS  120
STASTSSLFY SN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-171613084squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090046.12e-56squamosa promoter-binding-like protein 8
SwissprotQ8GXL36e-29SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBLA0A2G9HWN01e-56A0A2G9HWN0_9LAMI; Uncharacterized protein
STRINGMigut.B01572.1.p3e-50(Erythranthe guttata)
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xing S, et al.
    SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility.
    Plants (Basel), 2013. 2(3): p. 416-28
    [PMID:27137384]