PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote237918370011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 444aa MW: 49950.5 Da PI: 6.4553 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39 | 1.4e-12 | 253 | 300 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+h Er+RR+++N++f L +l+P+ +K++K+++L +++eY+++L+ Ote237918370011|237918370011 253 RNHVLSERKRREKLNKRFMILGSLVPSG-----GKVDKVSVLDHTIEYLRELE 300 579999********************98.....8****************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.9E-8 | 5 | 39 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.005 | 250 | 299 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.03E-18 | 253 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-10 | 253 | 300 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.41E-12 | 253 | 304 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.3E-17 | 254 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-15 | 256 | 305 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 444 aa Download sequence Send to blast |
MHILNLQTVV CFPHLGGVVE LGTTELVAED PNLIQHINSF LESSVHPRTP EEGLDQLLDD 60 PYMKMCSPNN SSDDFADNLL REGSNVEEGI DGEASQMQSW QVMDDAVSKC LNSSMNSSDC 120 IYQTHGEPAM IIPVSDEKKE TKRCLHDNQD CNQQKSCDIQ GNDDVHYHTI LSNLLKSSHQ 180 LILGPYNRNG NRESSFICWR KDGILGARVP QRGTPQKLLK KVLFKVARMH ESCRAQSGKS 240 YGKSKRELDE IDRNHVLSER KRREKLNKRF MILGSLVPSG GKVDKVSVLD HTIEYLRELE 300 RKVEELESYK EAMERESTTH SKSQDATERT SDNYGNDESK KPASNKRRAS CDTGRVWLRD 360 SLTDNVSVSV SDNDLLIELS CLGKESVLLE IMETLNKMHL ETHAIQSSTT DGTLSITVIA 420 KCMGLKPPPA IVLRQALQKV IRKC |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080947.1 | 1e-176 | transcription factor EGL1 isoform X1 | ||||
TrEMBL | A0A4D8YK46 | 0.0 | A0A4D8YK46_SALSN; Cycloeucalenol cycloisomerase | ||||
STRING | Migut.E01090.1.p | 1e-136 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4576 | 24 | 35 |