PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote237894910042
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 224aa    MW: 24466.9 Da    PI: 9.696
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote237894910042genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.94.8e-1083127554
                                   HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                   h+++Er RR+ri +++  L++l+P+ +      K + a++L + v+Y+k L
  Ote237894910042|237894910042  83 HSIAERLRRERIAERIRALQDLVPSvN------KTDRAAMLDEIVDYVKFL 127
                                   99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-1576137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.14578127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-1580137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-783127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-1184133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
DCGGGAVEFP LGLSLEQGKA GFLDASGSGR RFRREDVFHP RGASTVKPGF HGQPMTNTVP  60
TAPQPPAVRP RMRARRGQAT DPHSIAERLR RERIAERIRA LQDLVPSVNK TDRAAMLDEI  120
VDYVKFLRLQ VKVLSMSRLG GAGAVAPSII CRESSEDGRT QAAWEKWSDD GTERQVAKLM  180
EENVGAAMQF LQSKALCLMP ISLASLIYHA HPPDTVKSES NPPS
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831677.11e-123PREDICTED: transcription factor UNE12
SwissprotO227682e-95UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A022S2E71e-122A0A022S2E7_ERYGU; Uncharacterized protein
STRINGMigut.D00370.1.p1e-122(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57992434
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]