PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote237894910041
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 285aa    MW: 31363.9 Da    PI: 7.4447
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote237894910041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.58.7e-071061451054
                                   HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                           HLH  10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                   + RR+ri +++  L++l+P+ +      K + a++L + v+Y+k L
  Ote237894910041|237894910041 106 QLRRERIAERIRALQDLVPSvN------KTDRAAMLDEIVDYVKFL 145
                                   56******************55......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.04696145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-5102151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-11106158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-11109152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00117119150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
DCGGGAVEFP LGLSLEQGKA GFLDASGSGR RFRREDVFHP RGASTVKPGF HGQPMTNTVP  60
TAPQPPAVRP RMRARRGQAT DPHSIAERVC PLIPKTPLES AKLSLQLRRE RIAERIRALQ  120
DLVPSVNKTD RAAMLDEIVD YVKFLRLQVK YFCDEFHCLY LASVLGNECE SPFSSILHLN  180
DIFFLFDLSL TCQVLSMSRL GGAGAVAPSI ICRESSEDGR TQAAWEKWSD DGTERQVAKL  240
MEENVGAAMQ FLQSKALCLM PISLASLIYH AHPPDTVKSE SNPPS
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831677.11e-110PREDICTED: transcription factor UNE12
SwissprotO227684e-82UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A022S2E71e-109A0A022S2E7_ERYGU; Uncharacterized protein
STRINGMigut.D00370.1.p1e-109(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57992434
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]