PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote237870830001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | ERF | ||||||||
Protein Properties | Length: 105aa MW: 11557.2 Da PI: 10.9825 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.5e-19 | 29 | 79 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g Ote237870830001|237870830001 29 SLYRGVRKRA-WGKWVSEIREPKK---KSRIWLGTFATAEMAARAHDVAALAIKG 79 57*****887.**********854...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.23E-22 | 29 | 87 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.84E-32 | 29 | 88 | No hit | No description |
SMART | SM00380 | 3.0E-36 | 30 | 93 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-33 | 30 | 88 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.42 | 30 | 87 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.0E-13 | 30 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 31 | 42 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MANSEPECSN TTGSGPKNNL KRARDSPHSL YRGVRKRAWG KWVSEIREPK KKSRIWLGTF 60 ATAEMAARAH DVAALAIKGS AAILNFPEIS DLLPRPTTSS PRDVQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-21 | 22 | 92 | 6 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093630.1 | 3e-52 | ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q9LYD3 | 2e-41 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A4D9AHT5 | 7e-46 | A0A4D9AHT5_SALSN; EREBP-like factor | ||||
STRING | cassava4.1_032789m | 1e-43 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Publications ? help Back to Top | |||
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