PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote237759810011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 272aa    MW: 29412.4 Da    PI: 6.4966
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote237759810011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.41.6e-051231463255
                                   ..TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  32 kapskKlsKaeiLekAveYIksLq 55 
                                   +++s++ +Ka++L +++eY+k+Lq
  Ote237759810011|237759810011 123 HNQSERTDKASMLDEVIEYLKQLQ 146
                                   56899******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.0E-6122156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.12E-4123150No hitNo description
SuperFamilySSF474591.44E-6125169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
QDTGVVGSCS GLARAACCKS YASAGESATC GGGESRQVTL DSCDREFGGM TSTSLWSPEN  60
TSSGEDYTKT STEDHDSAFR SRTQACCGYW FKIDFERQVG EKGNRKGVGK LSVSAKSRAA  120
AVHNQSERTD KASMLDEVIE YLKQLQAQVH MMSRMNMPPM NMMMSLPMQQ QLQMSMLGMG  180
MGMGMGVMDI NAMGRAAMMP PPANAAAAFI PMPSWDIHAG DRLQFPPLTP DFISAFFACQ  240
AQAPPMTMDA YSRLAALYQQ FQQSSATSAS KN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093295.11e-78LOW QUALITY PROTEIN: transcription factor UNE10
TrEMBLA0A2G9GTZ33e-85A0A2G9GTZ3_9LAMI; Transcriptional repressors of the hairy/E(Spl) family (Contains HLH)
STRINGXP_002511647.15e-54(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43672132