PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote237569940001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 257aa    MW: 29323.6 Da    PI: 5.0953
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote237569940001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.23.4e-1222100147
                                   TSSS-HHHHHHHHHHHHHTTTT.................................-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.................................tWktIartmgkgRtlkqcksrwqky 47 
                                   rg + ++E +l+++++k+lG++                                 +W++Ia +++ gRt++++k++w+++
  Ote237569940001|237569940001  22 RGYFGKDEVDLIIRLHKLLGNRqimfypskfggdyvtphdectqidgrsfypvteRWSLIAGRLP-GRTANDVKNFWNTH 100
                                   788999***********************************************************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.464120IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-9244IPR009057Homeodomain-like
SuperFamilySSF466894.79E-11220IPR009057Homeodomain-like
PROSITE profilePS500908.00217101IPR017877Myb-like domain
SMARTSM007176.0E-1021103IPR001005SANT/Myb domain
PfamPF002491.2E-922100IPR001005SANT/Myb domain
CDDcd001671.09E-558101No hitNo description
SuperFamilySSF466894.79E-1173101IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-1577101IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
LNRCRKSCRL RWLNYLRPNI KRGYFGKDEV DLIIRLHKLL GNRQIMFYPS KFGGDYVTPH  60
DECTQIDGRS FYPVTERWSL IAGRLPGRTA NDVKNFWNTH ISKKSQPSVG EAGRGKTITE  120
SNIVRPRPRT FSNSKLPAWT AQLTRSNSSP PSVKEDDRDP SKLPSSSSAP SDEQKNSDEI  180
DRNGSLQEDL DECIRWWGNL LDMTENGEET PFLFPDEGPR IDGSMFLEGV GDRESTSADH  240
DELLSLVDDD LELEQYL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100106.11e-52transcription factor MYB90-like
SwissprotQ9FNV93e-33MY113_ARATH; Transcription factor MYB113
TrEMBLK4NRU87e-62K4NRU8_SCUBA; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1832223
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]