PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote237292390011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family AP2
Protein Properties Length: 396aa    MW: 44288.8 Da    PI: 9.0145
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote237292390011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.6e-17141190155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Ote237292390011|237292390011 141 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 190
                                   78*******************......55************************997 PP
2AP226.12.1e-08233304155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpse........ng.........kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV+ +k  grW+A+   +          +g         ++ ++ +lg f ++ eAa+a+++a+ k +g
  Ote237292390011|237292390011 233 SKYRGVTLHK-CGRWEARMGQFLGkkivhsieRGapfiymiimVCcRYMYLGLFESEVEAARAYDKAAIKCNG 304
                                   89********.7******9884443566555555*****9998556**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.2E-9141190IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-16141199IPR016177DNA-binding domain
SMARTSM003803.5E-33142204IPR001471AP2/ERF domain
PROSITE profilePS5103217.82142198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-17142198IPR001471AP2/ERF domain
CDDcd000188.94E-12142200No hitNo description
PfamPF008478.3E-5233304IPR001471AP2/ERF domain
CDDcd000181.16E-20233314No hitNo description
SuperFamilySSF541713.53E-11233314IPR016177DNA-binding domain
SMARTSM003806.3E-24234318IPR001471AP2/ERF domain
PROSITE profilePS5103214.355234312IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-12234313IPR001471AP2/ERF domain
PRINTSPR003673.5E-6235246IPR001471AP2/ERF domain
PRINTSPR003673.5E-6294314IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
PADSSLSGDE ADRRKADTAD SVASTTTSTT NNAAADEVDR NSSTLNFSIL NKHVIEIEDD  60
ANNDVVNKGS ELQLFPIGAS PPSPTPAMIR ANYWLNLXXX XXXXXXXXXX XXLGNYRTQF  120
PAPVQPPQAK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHAAARA  180
YDRAAIKFRG VDADINFTIS DYEEEMKQMK NLTKEEFVHI LRRQSNGFAR GSSKYRGVTL  240
HKCGRWEARM GQFLGKKIVH SIERGAPFIY MIIMVCCRYM YLGLFESEVE AARAYDKAAI  300
KCNGREAVTN FELSNYDREM NVSSGNGGNE SSLDLNLGIS LSTDSSKGNN TNRNLQFSDG  360
NRLKVEPNSA PPQELMSTKY HPMWAGIYSG FPPNSK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012834705.11e-150PREDICTED: floral homeotic protein APETALA 2 isoform X1
SwissprotB8AXC31e-94AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A0G2SJH41e-173A0A0G2SJH4_SALMI; AP10/EREBP Transcription Factors
STRINGMigut.F02018.1.p1e-149(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116