PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote236030280001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | GRAS | ||||||||
Protein Properties | Length: 229aa MW: 25755.5 Da PI: 10.2133 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 179.6 | 2.3e-55 | 40 | 228 | 2 | 192 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 +lL++cAeavs + ++ ++lL+++++++sp+gd+++Rla++f++AL+ar+a+++ ly a ++++ + e l++++ Ote236030280001|236030280001 40 HSLLTRCAEAVSCFNIAAGENLLKQIRKHSSPYGDANERLAHCFANALEARMAGTGAALYTASAARRIP---AGELLKSYQ 117 689***************************************************999999888888887...99******* PP GRAS 83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleet 161 ++ +P+ ++s++ aN+ I + +++++++HiiDf+i +G+QWp++++ L+ +p+gpp+l+iTg++ p++g +e++e+t Ote236030280001|236030280001 118 SYVTSCPFKRMSNIFANKSIARNAKESTKIHIIDFGILYGFQWPCIIHGLSLKPGGPPTLKITGIDYPQPGfkPAERVEQT 198 **********************************************************************999******** PP GRAS 162 gerLakfAeelgvpfefnvlvakrledlele 192 g+rLa+f+++++v+fe+n+ +ak++ed++le Ote236030280001|236030280001 199 GRRLADFCKRFNVTFEYNA-IAKKWEDIRLE 228 *******************.7******9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 37.473 | 13 | 229 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.1E-53 | 40 | 228 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
STTDSEEERK KQYRKTKEVK RGRPKGSKKN RKVNEVVDLH SLLTRCAEAV SCFNIAAGEN 60 LLKQIRKHSS PYGDANERLA HCFANALEAR MAGTGAALYT ASAARRIPAG ELLKSYQSYV 120 TSCPFKRMSN IFANKSIARN AKESTKIHII DFGILYGFQW PCIIHGLSLK PGGPPTLKIT 180 GIDYPQPGFK PAERVEQTGR RLADFCKRFN VTFEYNAIAK KWEDIRLED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-32 | 45 | 221 | 25 | 198 | Protein SCARECROW |
5b3h_A | 2e-32 | 45 | 221 | 24 | 197 | Protein SCARECROW |
5b3h_D | 2e-32 | 45 | 221 | 24 | 197 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012827860.1 | 1e-134 | PREDICTED: scarecrow-like protein 11 | ||||
Swissprot | Q9XE58 | 8e-76 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A022PXQ1 | 1e-133 | A0A022PXQ1_ERYGU; Uncharacterized protein | ||||
TrEMBL | A0A4D9BWE3 | 1e-134 | A0A4D9BWE3_SALSN; Uncharacterized protein | ||||
STRING | Migut.D02077.1.p | 1e-134 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Publications ? help Back to Top | |||
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