PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote234424100001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LBD

Protein Properties

Length: 81aa MW: 8545.81 Da PI: 9.6651

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote234424100001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	58.1	2.5e-18	9	79	25	95
DUF260 25 eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +q++++ +v+k+FG++ +++ ++a+pe++r ++++sl++eA r+ Pv+Gavg++++++++++q+++e++ Ote234424100001\|234424100001 9 AQAHATVFVAKFFGRAGLISSISAVPENQRAALFKSLLFEAAGRTVSPVSGAVGLLSTGNWRVCQAAVETV 79 678999************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.865	1	81	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-15	9	78	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
LQWIDTADAQ AHATVFVAKF FGRAGLISSI SAVPENQRAA LFKSLLFEAA GRTVSPVSGA 60 VGLLSTGNWR VCQAAVETVL R

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010086954.1	1e-42	LOB domain-containing protein 39
Refseq	XP_012846657.1	3e-43	PREDICTED: LOB domain-containing protein 38-like
Refseq	XP_027079080.1	2e-42	LOB domain-containing protein 37-like
Refseq	XP_027178641.1	2e-42	LOB domain-containing protein 37-like
Swissprot	Q9FN11	2e-41	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A022QT36	7e-42	A0A022QT36_ERYGU; Uncharacterized protein
TrEMBL	A0A200R323	2e-41	A0A200R323_9MAGN; Uncharacterized protein
STRING	Migut.L00203.1.p	1e-42	(Erythranthe guttata)
STRING	XP_010086954.1	5e-42	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]