PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100278550011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB | ||||||||
Protein Properties | Length: 228aa MW: 25674 Da PI: 9.308 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31 | 6e-10 | 20 | 66 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT+eE +++ a + + + +W ++a++++ g++ +++++ ++ + Ote100278550011|100278550011 20 AWTKEENKRFESALAIFDEKtpnRWFKVAEMIP-GKSVYDVINQYREL 66 7******************9*************.**********9975 PP | |||||||
2 | Myb_DNA-binding | 21.8 | 4.4e-07 | 100 | 137 | 10 | 47 |
HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++ + +++G+g+W+ I+r + +t+ q+ s+ qky Ote100278550011|100278550011 100 VRFLLGLEKHGKGDWRNISRNFVISKTPTQVASHAQKY 137 589999*****************789***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.655 | 13 | 67 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-4 | 14 | 67 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-9 | 17 | 69 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.48E-12 | 19 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.17E-9 | 20 | 67 | No hit | No description |
Pfam | PF00249 | 5.8E-8 | 20 | 66 | IPR001005 | SANT/Myb domain |
SMART | SM00717 | 1.3 | 94 | 140 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.79E-9 | 99 | 141 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.73E-5 | 99 | 137 | No hit | No description |
PROSITE profile | PS50090 | 4.391 | 99 | 138 | IPR017877 | Myb-like domain |
TIGRFAMs | TIGR01557 | 1.4E-10 | 100 | 141 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.9E-5 | 100 | 137 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-5 | 101 | 137 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
METLCPSSSW VRIQQKNNTA WTKEENKRFE SALAIFDEKT PNRWFKVAEM IPGKSVYDVI 60 NQYRELVADV SDIEAGLVPI PGYLASSFTL ELPDHRSFDV RFLLGLEKHG KGDWRNISRN 120 FVISKTPTQV ASHAQKYYLR QLSGGKDKRR PSIHDITTVH LSHQPHKSGG ADQITNPTTT 180 PKIVLDDLML FDSLAHHSNT GHCSAIFNIN NAAASTAGFY LKSPRFYG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 7e-14 | 21 | 96 | 11 | 86 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076737.1 | 1e-103 | transcription factor DIVARICATA-like | ||||
Refseq | XP_011076738.1 | 1e-103 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 8e-66 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A4D8ZZE5 | 1e-102 | A0A4D8ZZE5_SALSN; Uncharacterized protein | ||||
STRING | Migut.F00707.1.p | 6e-84 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Publications ? help Back to Top | |||
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