PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100277890011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB_related | ||||||||
Protein Properties | Length: 82aa MW: 9306.29 Da PI: 9.0049 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.7 | 6.3e-09 | 10 | 54 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT +++ a +++ + +W Iar +g g+++++++ +++ Ote100277890011|100277890011 10 SWTSKQNKQFEAALAKYDRDtpdRWINIARAVG-GKSAEEVRRHYL 54 7*****************99*************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.97E-13 | 3 | 57 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.272 | 3 | 57 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.3E-6 | 7 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-6 | 10 | 58 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-6 | 10 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.03E-5 | 17 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
MASSSMTSSS WTSKQNKQFE AALAKYDRDT PDRWINIARA VGGKSAEEVR RHYLALERDI 60 SNIENDHVPI PNYRAIPNGR ES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-25 | 1 | 74 | 1 | 74 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083673.1 | 1e-36 | protein RADIALIS-like 3 | ||||
Swissprot | F4JVB8 | 2e-29 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A4D9BAZ3 | 7e-36 | A0A4D9BAZ3_SALSN; Uncharacterized protein | ||||
STRING | Migut.N00487.1.p | 4e-32 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Publications ? help Back to Top | |||
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