PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100277160011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB_related

Protein Properties

Length: 291aa MW: 32519.7 Da PI: 6.168

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100277160011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54	3.8e-17	27	70	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T eE+ ++d++++lG++ W++Ia +++ gRt++++k++w++ Ote100277160011\|100277160011 27 RGAFTDEEERVIIDLHQKLGNK-WSAIAGYLP-GRTDNEIKNFWNT 70 89******************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.2E-10	9	33	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.71E-22	10	79	IPR009057	Homeodomain-like
PROSITE profile	PS51294	26.322	22	76	IPR017930	Myb domain
SMART	SM00717	1.6E-15	26	74	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-15	27	70	IPR001005	SANT/Myb domain
CDD	cd00167	4.10E-12	29	72	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.5E-22	34	73	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MTLHSTLLCG KSCRLRWTNY LRPDIKRGAF TDEEERVIID LHQKLGNKWS AIAGYLPGRT 60 DNEIKNFWNT RLKKKLVRNG IDPDTHLPRT HLNTFLHGLP HFLGCNDTRN LTWENVVTSQ 120 AFAARLAKAV LIGNILQLLS TGHSPPLAME SARVMNGPPW DSSTMGSQSG FEDVSRTAIE 180 SKMEIDSAGE MNSRELGESS IMPIDYELPD LVSASPDCFG RDQETSSFIS PTEFPNPAST 240 SDAFGDLAYD EARNSFWKQL LEISSVTAAY FIAVKPVCYR DRSRFLTEAA V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-21	10	76	42	108	B-MYB
1gv2_A	4e-21	10	76	39	105	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	7e-21	10	76	62	128	MYB TRANSFORMING PROTEIN
1mse_C	4e-21	10	76	39	105	C-Myb DNA-Binding Domain
1msf_C	4e-21	10	76	39	105	C-Myb DNA-Binding Domain
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024043293.1	1e-62	transcription factor MYB53
TrEMBL	A0A059PRR1	1e-112	A0A059PRR1_SALMI; MYB-related transcription factor
STRING	XP_006443249.1	2e-61	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154