PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100275850021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB_related

Protein Properties

Length: 539aa MW: 60975.8 Da PI: 8.5982

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100275850021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.6	6e-08	414	461	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E ++l+d+v +G g+W++I + + +Rt ++k++w+++l Ote100275850021\|100275850021 414 WTIAEVKKLIDGVSDYGVGRWSRIKKVFFstsAHRTSVDLKDKWRNLL 461 9*************************99**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.485	406	465	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-12	406	464	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.33E-16	408	469	IPR009057	Homeodomain-like
SMART	SM00717	4.1E-9	410	463	IPR001005	SANT/Myb domain
Pfam	PF13921	3.2E-7	414	464	No hit	No description
CDD	cd11660	1.49E-18	414	462	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MDKGVLDSLH TDDDAGYFRL QNDFCSMGEE YLLGVGLAES ITDMEYVSSE CLQTSVTDCP 60 VLTCADIDSP WKADLFRIMD VPECQNNVVC AKSSECCQNT SPHQESENLA EKKPVESPNG 120 NISKVNDVLS YSFDDIPLDE NDMSLSQPVE MLLCPKNEKR DECWQACQIG DTDRFQDQDA 180 LGNLLSGEIQ SDALPMLKRS RKPTKRYIDE VADPNLRHPK RRREVSSSTF RDKSVGVKEN 240 KKCDMGFKAM KLPSEESAVK AIQVPFASLV RKECPESPAY NTVQRLDRRN LTDKPKDHSA 300 ASDNQKRRNE CSLIVHQMKR NDGIPAANHR KYNNFSVAQS TKSDQCTPTI HSTRRNDSVT 360 ASGQTTKQHT AIAVRPKKKD ECVTGICRRK RDGNSPISES PDDVSGRRKH HRLWTIAEVK 420 KLIDGVSDYG VGRWSRIKKV FFSTSAHRTS VDLKDKWRNL LKASDLQGQR NQQGEKKRNV 480 AWRPLPKAIL RRVCELAAMH PYPKEGKPKI AEIQHVSPDR GTDITLRDYR RILRSINGN

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MDKGVLDSLH TDDDAGYFRL QNDFCSMGEE YLLGVGLAES ITDMEYVSSE CLQTSVTDCP  60
VLTCADIDSP WKADLFRIMD VPECQNNVVC AKSSECCQNT SPHQESENLA EKKPVESPNG  120
NISKVNDVLS YSFDDIPLDE NDMSLSQPVE MLLCPKNEKR DECWQACQIG DTDRFQDQDA  180
LGNLLSGEIQ SDALPMLKRS RKPTKRYIDE VADPNLRHPK RRREVSSSTF RDKSVGVKEN  240
KKCDMGFKAM KLPSEESAVK AIQVPFASLV RKECPESPAY NTVQRLDRRN LTDKPKDHSA  300
ASDNQKRRNE CSLIVHQMKR NDGIPAANHR KYNNFSVAQS TKSDQCTPTI HSTRRNDSVT  360
ASGQTTKQHT AIAVRPKKKD ECVTGICRRK RDGNSPISES PDDVSGRRKH HRLWTIAEVK  420
KLIDGVSDYG VGRWSRIKKV FFSTSAHRTS VDLKDKWRNL LKASDLQGQR NQQGEKKRNV  480
AWRPLPKAIL RRVCELAAMH PYPKEGKPKI AEIQHVSPDR GTDITLRDYR RILRSINGN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094643.1	0.0	uncharacterized protein LOC105174291 isoform X1
Refseq	XP_011094644.2	0.0	uncharacterized protein LOC105174291 isoform X2
TrEMBL	A0A4D8ZY39	0.0	A0A4D8ZY39_SALSN; Uncharacterized protein
STRING	Migut.L01689.1.p	1e-147	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9155	17	23