PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100275550001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family Whirly
Protein Properties Length: 263aa    MW: 29680.2 Da    PI: 10.3494
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100275550001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly68.51.2e-21123177155
                        Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsf 55 
                                   svyk+kaal+v+++ p+f+ ldsg++kl+++G++ll++a+a ++r+ydW++kq++
  Ote100275550001|100275550001 123 SVYKGKAALTVEPRPPEFSPLDSGAFKLSKEGFILLQFAPASGVRQYDWGRKQVY 177
                                   79***************************************************97 PP
2Whirly21.15.1e-07234262110138
                        Whirly 110 svtnslvkgnesfsvPvskaefavlrsll 138
                                    v+n++ +++es+++P++kaefavl s +
  Ote100275550001|100275550001 234 GVQNKIANVDESIYIPITKAEFAVLVSSF 262
                                   599**********************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.105.7E-27112177IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.73E-31116263IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.5E-19124177IPR013742Plant transcription factor
Gene3DG3DSA:2.30.31.101.8E-4231263IPR009044ssDNA-binding transcriptional regulator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MINYGSCAAP RVGISVPQHH KLSTYNSAIP TSILFFRRKN AAFPLSPLEH HSRKLSFNVK  60
NQYATPQEQN HQQQRFSSYD SPFPPXXXXX XXXXXXXXXX XXXXXRASVI ERQLPPRVYV  120
GYSVYKGKAA LTVEPRPPEF SPLDSGAFKL SKEGFILLQF APASGVRQYD WGRKQVYLSF  180
ICNLCRYGSS KGISLKPTKM LIWLQFRPIV IIGTGTSAQE TLVNSSMILI KERGVQNKIA  240
NVDESIYIPI TKAEFAVLVS SFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A2e-4211626336181p24: plant transcriptional regulator PBF-2
1l3a_B2e-4211626336181p24: plant transcriptional regulator PBF-2
1l3a_C2e-4211626336181p24: plant transcriptional regulator PBF-2
1l3a_D2e-4211626336181p24: plant transcriptional regulator PBF-2
4koq_A9e-431162637152Single-stranded DNA-binding protein WHY3, chloroplastic
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087065.22e-81single-stranded DNA-binding protein WHY1, chloroplastic
SwissprotQ9LL857e-42WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A022QN478e-69A0A022QN47_ERYGU; Uncharacterized protein
STRINGMigut.L01333.1.p4e-70(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77312430