PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100275530061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 520aa    MW: 56453 Da    PI: 5.532
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100275530061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.99.4e-135392948
                                  HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  d +lv++vk++G g+W+++ ++ g+ R++k+c++rw ++l
  Ote100275530061|100275530061 53 DAILVEYVKKHGEGNWNSVQKHTGLARCGKSCRLRWANHL 92
                                  568*********************************9986 PP
2Myb_DNA-binding21.74.6e-0798126130
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIart 30 
                                   +g++T eE+ l++++++++G++ W++ a++
  Ote100275530061|100275530061  98 KGAFTSEEERLIIELHAKMGNK-WARMAAH 126
                                   799*******************.***9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1133496IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-193795IPR009057Homeodomain-like
SMARTSM007171.0E-53894IPR001005SANT/Myb domain
PfamPF002495.1E-115392IPR001005SANT/Myb domain
SuperFamilySSF466892.61E-2053122IPR009057Homeodomain-like
CDDcd001671.64E-85392No hitNo description
PROSITE profilePS500906.38893126IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.3E-1396126IPR009057Homeodomain-like
SMARTSM007171.797136IPR001005SANT/Myb domain
PfamPF002498.4E-698126IPR001005SANT/Myb domain
CDDcd001670.00536100126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MGRSSTAESE DSVLFADSPL SNHDDNFGGT SNVGVVLKKG PWTSAXXXXX XXDAILVEYV  60
KKHGEGNWNS VQKHTGLARC GKSCRLRWAN HLRPNLKKGA FTSEEERLII ELHAKMGNKW  120
ARMAAHPFKV SKNYTSGTIL CDFGRHQRAG LPLYPPDLCL HSPPVNQQQL NSPRIYGRDK  180
AFHDILQSNG YRAPDIMFDS FNILAFTPEI PGIPPSLSIG DGFASPQSYG FVPQATGVLD  240
HAREPDEPMS DYGSGAVDDA PALNRTQTDT CVNTLFQSFG PCFPYDPDRT KKLLSSGVNQ  300
DTPFMSNAIF SXXXXEHFAD AQKLELPSLQ YHETGLGAWD TPPESIDLVV QSPLSGPLPS  360
HCPSPGSSGL LEDLVYESKA LGKSENQSSG WATSTNASHR EITDGSALRT CSTEFKGSID  420
PNSPSGNSMS LSGYSPSAGR SLEDDVTLLH HVKSEVLDPS WIVDGESKFD HWRPDAILGS  480
CGVEQSGPGS KQKSDSTSAL GFSSCNWNNM PPVCQMSDIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-193712425105MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091869.10.0transcription factor GAMYB
RefseqXP_011091870.10.0transcription factor GAMYB
RefseqXP_011091873.10.0transcription factor GAMYB
RefseqXP_020552724.10.0transcription factor GAMYB
TrEMBLA0A059PRV50.0A0A059PRV5_SALMI; MYB-related transcription factor
STRINGMigut.N01870.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14059713