PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100274680041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | WOX | ||||||||
Protein Properties | Length: 167aa MW: 19501.3 Da PI: 9.5144 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.7 | 5.6e-20 | 9 | 68 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql Leel+++ r+p+a+++++++++l +++ ++V++WFqN++a++++ Ote100274680041|100274680041 9 TRWCPTTEQLMLLEELYRRgLRTPTAAQIQKITAHLslhgKIQGKNVFYWFQNHKARDRQ 68 8*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 114.8 | 4.3e-37 | 7 | 69 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++tRW+Pt+eQ+++Leely++GlrtP++++iq+ita+L+ +Gki++kNVfyWFQN+kaR+rqk Ote100274680041|100274680041 7 TNTRWCPTTEQLMLLEELYRRGLRTPTAAQIQKITAHLSLHGKIQGKNVFYWFQNHKARDRQK 69 689***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.333 | 4 | 69 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.85E-11 | 4 | 72 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.6E-7 | 6 | 73 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.42E-5 | 9 | 69 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-8 | 9 | 68 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.6E-17 | 9 | 68 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MMSPPSTNTR WCPTTEQLML LEELYRRGLR TPTAAQIQKI TAHLSLHGKI QGKNVFYWFQ 60 NHKARDRQKL RRKIAYQHHR LNQFLPFSSL NHHFQPQGTG GCDEAPDFER MSQTWKWDPP 120 KDGLMRSYGR DSSSMVIDLC VCGLPRYAQM SNSCSEGYNL FIFCFPL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089388.1 | 1e-48 | WUSCHEL-related homeobox 3-like | ||||
TrEMBL | A0A4D9BWP3 | 1e-39 | A0A4D9BWP3_SALSN; Uncharacterized protein | ||||
STRING | cassava4.1_030827m | 1e-37 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2959 | 19 | 51 |