PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100274550081

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

M-type_MADS

Protein Properties

Length: 88aa MW: 10128.6 Da PI: 9.7762

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100274550081	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	102	2.2e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s Ote100274550081\|100274550081 9 KRIENKVNRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNKGKLYEFCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	33.599	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.6E-42	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.07E-42	2	78	No hit	No description
SuperFamily	SSF55455	1.57E-34	2	76	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.0E-34	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.0E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.0E-34	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.0E-34	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
MGRGKVELKR IENKVNRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN KGKLYEFCSN 60 SSIAKTLERY HKSSYELLET QQSPSDEQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	2e-21	1	74	1	73	MEF2 CHIMERA
6byy_B	2e-21	1	74	1	73	MEF2 CHIMERA
6byy_C	2e-21	1	74	1	73	MEF2 CHIMERA
6byy_D	2e-21	1	74	1	73	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable MADS-box transcription factor that functions with J2 and EJ2 in meristem maturation. {ECO:0000269\|PubMed:28528644}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011102220.1	1e-47	MADS-box protein CMB1-like
Refseq	XP_016438828.1	8e-49	PREDICTED: MADS-box protein CMB1-like
Swissprot	K4BND8	2e-46	MADS4_SOLLC; MADS-box protein 04g005320
TrEMBL	A0A4D9BPC4	2e-49	A0A4D9BPC4_SALSN; MADS-box transcription factor, plant
STRING	XP_009788435.1	2e-46	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Soyk S, et al. Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene. Cell, 2017. 169(6): p. 1142-1155.e12 [PMID:28528644]