PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100274130012 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | NAC | ||||||||
Protein Properties | Length: 223aa MW: 24876.8 Da PI: 9.6969 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103.4 | 3.1e-32 | 68 | 141 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++wyfFs++dkky+tg+r+nrat+sg+Wkatg+dk ++ +++ +g++ktLvfykgrap+g+k+dW+mheyrl Ote100274130012|100274130012 68 PQNDWYFFSHKDKKYPTGTRTNRATSSGFWKATGRDKVIYG-SSRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 141 4579************************************9.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 35.711 | 11 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-16 | 68 | 141 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-36 | 68 | 174 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MSISVNGQSQ VPPGFXXXXX XXXXXXXXXX XVLPQEEGGV GEDRFGRDPR CGSQQARAMG 60 HSRIGSTPQN DWYFFSHKDK KYPTGTRTNR ATSSGFWKAT GRDKVIYGSS RRIGMRKTLV 120 FYKGRAPHGQ KSDWIMHEYR LDDAFATPHS TTVCNVNGET GQEEGWVVCR VFKKKNLTHK 180 TSDSPLTTPT WSSSSLTTIN SCNEATLEEL LHSIGSPSTR DGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-31 | 69 | 180 | 70 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-31 | 69 | 180 | 70 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-31 | 69 | 180 | 70 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-31 | 69 | 180 | 70 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-31 | 69 | 180 | 73 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-31 | 69 | 180 | 73 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-31 | 69 | 180 | 73 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-31 | 69 | 180 | 73 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-31 | 69 | 180 | 73 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-31 | 69 | 180 | 73 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-31 | 69 | 180 | 73 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-31 | 69 | 180 | 73 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-31 | 69 | 180 | 70 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-31 | 69 | 180 | 70 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093005.1 | 2e-81 | NAC domain-containing protein 43 | ||||
Swissprot | Q84WP6 | 1e-73 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | B9SVG2 | 8e-77 | B9SVG2_RICCO; NAC domain-containing protein, putative | ||||
STRING | XP_002529981.1 | 1e-77 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |