PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100272800001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 298aa MW: 33348.6 Da PI: 9.5304

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100272800001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.3	3.7e-33	53	194	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkr 73 lp+G++F+P+d+e++ ++L++kv ++ ++++ +i+ +i++++P++Lp v++e + +fF++ +k+y+tg+r Ote100272800001\|100272800001 53 LPAGVKFDPSDQEIL-QHLEAKVYSDAkklhplIDEFIpTIHGQnGICYTHPEKLP-GVSKEGQVRHFFHRPSKAYTTGTR 131 799*********9.99988885565443333333666657******.556667888*********** PP NAM 74 knratk.......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 k+r+++ + +W++tgk+++v + g +g kk+Lv+y gr++k+ekt+Wvmh+y+l Ote100272800001\|100272800001 132 KRRKVHtdddeggETRWHKTGKTRPVSA-AGIIKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 194 7444455555778********9.999*******66589************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-37	47	213	IPR003441	NAC domain
PROSITE profile	PS51005	33.064	53	213	IPR003441	NAC domain
Pfam	PF02365	6.6E-15	54	194	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MTWSNNDDAL HVQLITTTKQ NSKTDHPRTL ICPSCGHAVQ LQDQSGLQDL PGLPAGVKFD 60 PSDQEILQHL EAKVYSDAKK LHPLIDEFIP TIHGQNGICY THPEKLPGVS KEGQVRHFFH 120 RPSKAYTTGT RKRRKVHTDD DEGGETRWHK TGKTRPVSAA GIIKGYKKIL VLYTNYGRQR 180 KPEKTNWVMH QYHLGHNEEE KDGELVVSKV FYQTQPRQCG SSTIKDAFVN TTKSASKSSE 240 TSLILKNQSL MEYYNPSLVG FSQNINRESP PALIPNLVVH GDGSSSFLHL PSTASKGK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096365.1	1e-162	NAC domain-containing protein 73
Swissprot	O49459	1e-118	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A2G9GL67	1e-162	A0A2G9GL67_9LAMI; Uncharacterized protein
STRING	EOY28152	1e-150	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2875	24	54

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]