PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100272740091
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 465aa    MW: 51596.5 Da    PI: 6.9783
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100272740091genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.9e-08120139525
                                   --SGGGGTS--TTTTT-SS-S CS
                       zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                                   +C ++++ G C yG+rC++ H
  Ote100272740091|100272740091 120 ICTYYQK-GLCAYGSRCRYDH 139
                                   7******.************* PP
2zf-CCCH24.54.7e-08223245326
                                   S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                   +++C+ fa+ G+C++G +C+++Hg
  Ote100272740091|100272740091 223 QPICS-FAAAGECPHGVNCRRIHG 245
                                   68899.*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.34787114IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-488113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-790112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.014115142IPR000571Zinc finger, CCCH-type
SMARTSM003560.0015116141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-5118139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-4120139IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-5120139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.23220247IPR000571Zinc finger, CCCH-type
SMARTSM003560.012221246IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-5223245IPR000571Zinc finger, CCCH-type
SuperFamilySSF578508.84E-13277353No hitNo description
Gene3DG3DSA:3.30.40.102.9E-10284348IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001621.34E-4288348No hitNo description
SMARTSM001846.6E-8289346IPR001841Zinc finger, RING-type
PfamPF000974.8E-8289346IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.607289347IPR001841Zinc finger, RING-type
PROSITE patternPS005180313322IPR017907Zinc finger, RING-type, conserved site
SMARTSM0035640350378IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.423355379IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MSEFSLIEQK LQSSSKNFRR FLKDLQQHVE TLVFDLTEYE MSILLGDPCK ATEISPLMGD  60
GPFSLVLELI DFVGKDEIVV YVTSMISDIR VLCKFFAHGA CLKGEHCEYS HDWKAPPNNI  120
CTYYQKGLCA YGSRCRYDHI KVSRLHSSVL SSSADLASSK ELSSGAATFG THLATGVSVE  180
HPGSNLPVHP LSRTAWGENS GHSDTLQSGD DLAGILGIDP ADQPICSFAA AGECPHGVNC  240
RRIHGDLCPT CRKHCLHPFR PREREEHMQT CEKRQKHLEA LTHSQEIECS VCLERILSKP  300
TAAERKFGIL SECDHPFCIS CIRNWRNTSR ASGMDANSAL RSCPICRKLX XISIDCKHFD  360
FGNGTCPFGT SCFYKMPINL IDYRFGIVVG VVTHAADSSL QHAYRDGRIE EVALRHLGAE  420
DGNTVVAKNI RFSLLPFFFL CPILPISQHL CASFFYGKID GLGMA
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844691.11e-164PREDICTED: E3 ubiquitin-protein ligase makorin, partial
SwissprotQ5ZA071e-130C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A4D8Y9T11e-175A0A4D8Y9T1_SALSN; E3 ubiquitin-protein ligase makorin
STRINGMigut.N01471.1.p1e-162(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]