PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100272460061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | AP2 | ||||||||
Protein Properties | Length: 319aa MW: 35834.9 Da PI: 9.5618 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.5 | 3.4e-13 | 57 | 101 | 1 | 50 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaar 50 s+y+GV++++++grW+++I+d + k+++lg f ta Aa aai++r Ote100272460061|100272460061 57 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFATAHAAAWAAIKFR 101 78*******************......55********************98 PP | |||||||
2 | AP2 | 44.7 | 3.3e-14 | 145 | 195 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g Ote100272460061|100272460061 145 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 195 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.08E-10 | 57 | 111 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.9E-6 | 57 | 101 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.206 | 58 | 110 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-9 | 58 | 110 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-21 | 58 | 116 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.57E-25 | 145 | 205 | No hit | No description |
SuperFamily | SSF54171 | 2.55E-17 | 145 | 205 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.0E-10 | 145 | 195 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.1E-17 | 146 | 204 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.4E-31 | 146 | 209 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.461 | 146 | 203 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-6 | 147 | 158 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-6 | 185 | 205 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
METVGGGGMP EFPRAHWVGV KFCQTELHGG GGNAILGKEA AAQPLKKSRR GPRSRSSQYR 60 GVTFYRRTGR WESHIWDCGK QVYLGGFATA HAAAWAAIKF RGVDADINFS LEDYEDDLKQ 120 MSNLTKEEFV HVLRRQSTGF PRGSSKYRGV TLHKCGRWEA RMGQFLGKKY VYLGLFDTEI 180 EAARAYDKAA IKCNGKEAVT NFDASIYDDE LKSADLSLGS SVSRIDGHES SENPWRLRSG 240 QHQRRRDAYS ENETLQLLSQ THLHSPSSFN PSNRFGRQFD AHFISSHNYQ QQQQFHELGG 300 ARNAGGQVFL SLEMNSNGK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099111.1 | 1e-130 | floral homeotic protein APETALA 2 isoform X2 | ||||
Swissprot | P47927 | 1e-115 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A2G9G0S3 | 1e-130 | A0A2G9G0S3_9LAMI; Uncharacterized protein | ||||
STRING | XP_004509117.1 | 1e-125 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2019 | 23 | 65 |