PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100272260041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WRKY

Protein Properties

Length: 175aa MW: 20028.4 Da PI: 7.5693

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100272260041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.9	1.6e-31	96	154	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+++r ++d+ vv++tYeg Hnh+ Ote100272260041\|100272260041 96 LDDGYKWRKYGQKSVKNSVHPRSYYRCTHHTCSVKKQIQRLSRDTAVVVTTYEGIHNHP 154 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.4E-32	83	154	IPR003657	WRKY domain
SuperFamily	SSF118290	8.63E-28	88	155	IPR003657	WRKY domain
PROSITE profile	PS50811	28.438	91	156	IPR003657	WRKY domain
SMART	SM00774	2.7E-35	96	155	IPR003657	WRKY domain
Pfam	PF03106	1.1E-24	97	154	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MEGENFPYLF APSPFPLNGS TSNNGFEQSV QNSGFPCSDQ MDLACLLSAN SMEHVPVSTS 60 SMKEVDHXXX XXXXXXXXXX IPPRVAFHTR SEEDILDDGY KWRKYGQKSV KNSVHPRSYY 120 RCTHHTCSVK KQIQRLSRDT AVVVTTYEGI HNHPCEKLME TLTPLLKQLQ FLSRF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-24	84	153	2	71	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011081140.1	4e-77	probable WRKY transcription factor 43
Swissprot	Q8VWQ4	8e-55	WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBL	A0A0D5Y9A2	2e-89	A0A0D5Y9A2_SALMI; WRKY protein
STRING	Migut.A00716.1.p	2e-67	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6374	24	33