PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100270600021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 360aa MW: 40726.8 Da PI: 4.8333

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100270600021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.5	4.5e-52	6	165	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk................................ 49 lppGfrFhPtdeelv +yL +k++g +el evi+evd+yk+ePwdLp Ote100270600021\|100270600021 6 LPPGFRFHPTDEELVAYYLDRKINGGIIEL-EVIPEVDLYKCEPWDLPGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxvd 85 79*************************9.99***********5589*************999999988766 PP NAM 50 ..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ ewyf+s+rd+ky++g+r+nrat+sgyWkatgkd++v s ++++vg+kktLv+y+grap+g +tdWvmheyrl Ote100270600021\|100270600021 86 ksFLPSKDMEWYFYSPRDRKYPNGSRTNRATRSGYWKATGKDRAVQS-QKRAVGMKKTLVYYRGRAPHGIRTDWVMHEYRL 165 554444888*********************************9.9999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.32E-19	2	55	IPR003441	NAC domain
PROSITE profile	PS51005	59.549	6	189	IPR003441	NAC domain
Pfam	PF02365	2.3E-28	7	165	IPR003441	NAC domain
SuperFamily	SSF101941	7.32E-39	91	189	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MGAMTLPPGF RFHPTDEELV AYYLDRKING GIIELEVIPE VDLYKCEPWD LPGXXXXXXX 60 XXXXXXXXXX XXXXXXXXXX XXXVDKSFLP SKDMEWYFYS PRDRKYPNGS RTNRATRSGY 120 WKATGKDRAV QSQKRAVGMK KTLVYYRGRA PHGIRTDWVM HEYRLLDSVS ATAPSTLKDS 180 YALCRVFKKN IVIPRSGKQE SAGAAVDQVL WDDDNGATPE TSRDQRETGA DDDHDQNTTK 240 INPSEASSSD VTQTPIAVIS KEHSTAQIPS DEVNSSLDQF YSCHGTENIS NFIQDYTGLF 300 YESWCPPLGM EDFPYMENLG SSGECRLRDY SSGIANLEEI YSLCSTHDTI LNCQNYAGSN

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MGAMTLPPGF RFHPTDEELV AYYLDRKING GIIELEVIPE VDLYKCEPWD LPGXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXVDKSFLP SKDMEWYFYS PRDRKYPNGS RTNRATRSGY  120
WKATGKDRAV QSQKRAVGMK KTLVYYRGRA PHGIRTDWVM HEYRLLDSVS ATAPSTLKDS  180
YALCRVFKKN IVIPRSGKQE SAGAAVDQVL WDDDNGATPE TSRDQRETGA DDDHDQNTTK  240
INPSEASSSD VTQTPIAVIS KEHSTAQIPS DEVNSSLDQF YSCHGTENIS NFIQDYTGLF  300
YESWCPPLGM EDFPYMENLG SSGECRLRDY SSGIANLEEI YSLCSTHDTI LNCQNYAGSN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-50	1	190	12	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-50	1	190	12	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-50	1	190	12	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-50	1	190	12	166	NO APICAL MERISTEM PROTEIN
3swm_A	3e-50	1	190	15	169	NAC domain-containing protein 19
3swm_B	3e-50	1	190	15	169	NAC domain-containing protein 19
3swm_C	3e-50	1	190	15	169	NAC domain-containing protein 19
3swm_D	3e-50	1	190	15	169	NAC domain-containing protein 19
3swp_A	3e-50	1	190	15	169	NAC domain-containing protein 19
3swp_B	3e-50	1	190	15	169	NAC domain-containing protein 19
3swp_C	3e-50	1	190	15	169	NAC domain-containing protein 19
3swp_D	3e-50	1	190	15	169	NAC domain-containing protein 19
4dul_A	2e-50	1	190	12	166	NAC domain-containing protein 19
4dul_B	2e-50	1	190	12	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00205	DAP	Transfer from AT1G54330	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095829.1	1e-169	NAC transcription factor 29
Swissprot	Q9FFI5	2e-79	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A022QM93	1e-140	A0A022QM93_ERYGU; Uncharacterized protein
STRING	Migut.M01499.1.p	1e-141	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4621	24	42

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]