PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100270410021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 262aa MW: 29625.9 Da PI: 7.0452 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 19.6 | 1.5e-06 | 196 | 224 | 27 | 55 |
HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 27 aeereeLAkklgLterqVkvWFqNrRake 55 ++e+ LA+ +gL+++q+ +WF N+R ++ Ote100270410021|100270410021 196 ESEKVALADATGLDQKQINNWFINQRKRH 224 678889********************885 PP | |||||||
2 | ELK | 30.3 | 9.3e-11 | 169 | 190 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK+ Ll+KYsgyL+sLkqE+s Ote100270410021|100270410021 169 ELKNYLLKKYSGYLSSLKQELS 190 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 5.0E-20 | 73 | 117 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.7E-21 | 74 | 115 | IPR005540 | KNOX1 |
SMART | SM01188 | 1.6E-5 | 169 | 190 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.912 | 169 | 189 | IPR005539 | ELK domain |
Pfam | PF03789 | 5.8E-8 | 169 | 190 | IPR005539 | ELK domain |
SMART | SM00389 | 6.5E-4 | 175 | 231 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-15 | 185 | 230 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.99E-10 | 195 | 239 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.507 | 196 | 227 | IPR001356 | Homeobox domain |
Pfam | PF05920 | 1.4E-9 | 196 | 223 | IPR008422 | Homeobox KN domain |
CDD | cd00086 | 7.04E-7 | 202 | 228 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 202 | 225 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 262 aa Download sequence Send to blast |
MEEYSLQVGE NGNSRGGDFV YAGAPVYTRT SSGSGNHPRT ALVKTEAGTS RFQHPCIIRG 60 HENQHHHHHR QFDAIKAKII AHPQYSTLLE AYMDCQKVGA PPHVAARLAA AREEFAARQR 120 ASRDEHSKDP ELDQFMDKSE CIGSSEEEQD NSGGETGLPE IDPRKEDQEL KNYLLKKYSG 180 YLSSLKQELS RKKKKESEKV ALADATGLDQ KQINNWFINQ RKRHWKPSED MQFMVMDGLN 240 PHNAALYMEG HYMADGPYRS GP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Appears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022723727.1 | 1e-108 | homeobox protein knotted-1-like 2 | ||||
Refseq | XP_022723765.1 | 1e-108 | homeobox protein knotted-1-like 2 | ||||
Swissprot | Q41330 | 5e-97 | KN1_SOLLC; Homeotic protein knotted-1 | ||||
TrEMBL | A0A061FMA1 | 1e-104 | A0A061FMA1_THECC; KNOTTED-like from | ||||
STRING | EOY15624 | 1e-105 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4973 | 23 | 33 |