PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100268870071

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB_related

Protein Properties

Length: 984aa MW: 109228 Da PI: 4.8369

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100268870071	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.4	1.9e-19	79	125	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+ ++++v+++G++ W+tIa++++ gR +kqc++rw+++l Ote100268870071\|100268870071 79 KGPWSKEEDDVIIELVNKYGPKKWSTIANHLP-GRIGKQCRERWHNHL 125 79****************************.***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	38	37	75	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.09E-5	40	83	IPR009057	Homeodomain-like
PROSITE profile	PS50090	4.344	44	73	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.2E-11	56	88	IPR009057	Homeodomain-like
PROSITE profile	PS51294	33.143	74	129	IPR017930	Myb domain
SuperFamily	SSF46689	3.79E-25	76	162	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-18	78	127	IPR001005	SANT/Myb domain
Pfam	PF00249	4.2E-18	79	125	IPR001005	SANT/Myb domain
CDD	cd00167	3.00E-16	81	125	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.2E-25	89	124	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-10	125	162	IPR009057	Homeodomain-like
PROSITE profile	PS51294	7.117	130	177	IPR017930	Myb domain
SMART	SM00717	0.0027	130	175	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 984 aa Download sequence Send to blast
MEGDTIGNNT PSDAARNSLQ RARPLHGRTS GPTRRSTKGQ WTAEEVSRNL QYNSECFKDR 60 TDVQCLHRWQ KVLNPDLVKG PWSKEEDDVI IELVNKYGPK KWSTIANHLP GRIGKQCRER 120 WHNHLNPNIN KEAWTQDEEL TLIRAHQVIG NKWAELTKFL PGSSVKKKLD MYLASGLLSQ 180 FQGLPLVNHH SQSEASSTSK AQQISEDNSV IKSGVEVEEA SECSQGSNIA SMSQPTGNIM 240 LHSLGDCRVT EESSSIPFSE DYRPAIQETA FAIPEAPCEL SNKFLEHDFS LDWGAFAGKD 300 WPLNANELPD MSLLDLGQES PGMFMSTSSS GQDINHEAVP FLQESHVPLG TSTSMVMDND 360 TQNAISTSDS RMVYSEADRD GCYPSEDVSH INSLLHHYSR LQIPENGTFS SQSCYTPSES 420 KMGSSYSQPL PFPMQLPAAE GPLVLDIDPN QYSNPPSTQD GFIYPKESDC LRCEDSSIEA 480 KETPKLVPIN DLVLTSPSDS QRCPSVDKDN KTEDQKDSGA LFYEPPRFPS LDIPFFNCDL 540 IQSGSDMHQD YSPLGIRQLM ISSMTPFKLW DSPSRDDSPD AILKSAAKTF TGTPSILKKR 600 HRDLVSPLSE KRGEKKLEAC RKQGSYSNRT NDFPRLEVMF EECLQNEGQM FSQSPNRRNF 660 EASCTEKENT TSASGQEQNE GNKSIAISER ESAEEYDNNS SDCSNKITEK IAAIDVRTKA 720 LDKDSSETAN ASSGVLLEHD VNDLLFFSPD RLVIKNDRAI GLSARALAKQ SSRRLDAVSK 780 HGAILTSSDT CFSVLCSPRL CSKDRTNLFM TSLQSSSPSE KKVESSGKGL FNENNIFVET 840 PFKRTIDSPS AWKSPWFFNS FVPGPRVDTD ITIEDIGYFL SPGDGSYDAI GLMKQLEEQT 900 SGAFADAQKV LGDETPDTIM KRKCAIIYDE EKENNQNPSS VSSFMTERRT LDFSECGTPG 960 KESARFSGSN SLSSPSSYLL KNCR

Sequence ? help Back to Top

Protein Sequence Length: 984 aa Download sequence Send to blast

MEGDTIGNNT PSDAARNSLQ RARPLHGRTS GPTRRSTKGQ WTAEEVSRNL QYNSECFKDR  60
TDVQCLHRWQ KVLNPDLVKG PWSKEEDDVI IELVNKYGPK KWSTIANHLP GRIGKQCRER  120
WHNHLNPNIN KEAWTQDEEL TLIRAHQVIG NKWAELTKFL PGSSVKKKLD MYLASGLLSQ  180
FQGLPLVNHH SQSEASSTSK AQQISEDNSV IKSGVEVEEA SECSQGSNIA SMSQPTGNIM  240
LHSLGDCRVT EESSSIPFSE DYRPAIQETA FAIPEAPCEL SNKFLEHDFS LDWGAFAGKD  300
WPLNANELPD MSLLDLGQES PGMFMSTSSS GQDINHEAVP FLQESHVPLG TSTSMVMDND  360
TQNAISTSDS RMVYSEADRD GCYPSEDVSH INSLLHHYSR LQIPENGTFS SQSCYTPSES  420
KMGSSYSQPL PFPMQLPAAE GPLVLDIDPN QYSNPPSTQD GFIYPKESDC LRCEDSSIEA  480
KETPKLVPIN DLVLTSPSDS QRCPSVDKDN KTEDQKDSGA LFYEPPRFPS LDIPFFNCDL  540
IQSGSDMHQD YSPLGIRQLM ISSMTPFKLW DSPSRDDSPD AILKSAAKTF TGTPSILKKR  600
HRDLVSPLSE KRGEKKLEAC RKQGSYSNRT NDFPRLEVMF EECLQNEGQM FSQSPNRRNF  660
EASCTEKENT TSASGQEQNE GNKSIAISER ESAEEYDNNS SDCSNKITEK IAAIDVRTKA  720
LDKDSSETAN ASSGVLLEHD VNDLLFFSPD RLVIKNDRAI GLSARALAKQ SSRRLDAVSK  780
HGAILTSSDT CFSVLCSPRL CSKDRTNLFM TSLQSSSPSE KKVESSGKGL FNENNIFVET  840
PFKRTIDSPS AWKSPWFFNS FVPGPRVDTD ITIEDIGYFL SPGDGSYDAI GLMKQLEEQT  900
SGAFADAQKV LGDETPDTIM KRKCAIIYDE EKENNQNPSS VSSFMTERRT LDFSECGTPG  960
KESARFSGSN SLSSPSSYLL KNCR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	4e-49	59	164	38	143	MYB PROTO-ONCOGENE PROTEIN
1h89_C	4e-49	59	164	38	143	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089667.1	0.0	transcription factor MYB3R-1 isoform X1
Refseq	XP_011089827.1	0.0	transcription factor MYB3R-1 isoform X1
Refseq	XP_011089990.1	0.0	transcription factor MYB3R-1 isoform X1
Refseq	XP_020553179.1	0.0	transcription factor MYB3R-1 isoform X1
Refseq	XP_020553183.1	0.0	transcription factor MYB3R-1 isoform X1
TrEMBL	A0A4D9B492	0.0	A0A4D9B492_SALSN; Uncharacterized protein
STRING	Migut.E01513.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3107	24	48