PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100268650011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 228aa MW: 25989.8 Da PI: 4.4158 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.3 | 1.3e-18 | 64 | 109 | 11 | 56 |
HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ Le+ Fe ++++ e++++LAkkl+L+ rqV vWFqNrRa++k Ote100268650011|100268650011 64 EVHLLEKSFEAENKLEPERKTQLAKKLNLQPRQVAVWFQNRRARWK 109 6789*****************************************9 PP | |||||||
2 | HD-ZIP_I/II | 102.2 | 4.4e-33 | 65 | 151 | 11 | 92 |
HD-ZIP_I/II 11 vklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkray.....dalkeenerLekevee 86 v+lLE+sFe+e+kLeperK++la++L+lqprqvavWFqnrRAR+ktkqlE+dy++Lk+ l ++ +++ ke+++ Ote100268650011|100268650011 65 VHLLEKSFEAENKLEPERKTQLAKKLNLQPRQVAVWFQNRRARWKTKQLERDYDQLKSXXxxxxxXXLLSNYDSMVKENDK 145 899******************************************************975111115688999********* PP HD-ZIP_I/II 87 Lreelk 92 L++e++ Ote100268650011|100268650011 146 LKSEVE 151 *99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.71E-18 | 50 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.5E-17 | 53 | 115 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 15.758 | 58 | 111 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-20 | 58 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.31E-15 | 59 | 112 | No hit | No description |
Pfam | PF00046 | 8.3E-16 | 64 | 109 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 86 | 109 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 5.8E-7 | 111 | 151 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence Send to blast |
MMGFCVCPLE TPARLLWCSS FFRHNACLYW ICGSRKWSLV EFSSSSLATT TTCCSSGTVI 60 PDFEVHLLEK SFEAENKLEP ERKTQLAKKL NLQPRQVAVW FQNRRARWKT KQLERDYDQL 120 KSXXXXXXXX XLLSNYDSMV KENDKLKSEV EDRLSTGSDG SAVVDDDGRQ LLDSGDSYFP 180 NNDYADCMAA VDGINSEEDD GSDDGPRYFT DVFAVAEQQE PIGWCIWS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012849408.1 | 7e-79 | PREDICTED: homeobox-leucine zipper protein HAT5 | ||||
Swissprot | Q02283 | 1e-48 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A4D9BA50 | 9e-83 | A0A4D9BA50_SALSN; Homeobox-leucine zipper protein | ||||
STRING | Migut.H00128.1.p | 3e-78 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7891 | 23 | 30 |
Publications ? help Back to Top | |||
---|---|---|---|
|