PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100268410021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | bHLH | ||||||||
Protein Properties | Length: 508aa MW: 56417 Da PI: 8.4559 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.4 | 0.00029 | 260 | 277 | 2 | 19 |
HHHHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa 19 r +h++ E+rRR++iN++ Ote100268410021|100268410021 260 RSKHSATEQRRRSKINDR 277 889*************96 PP | |||||||
2 | HLH | 25.3 | 2.7e-08 | 320 | 352 | 19 | 55 |
HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 f++Lre++P++ ++K +Ka+ L +++eYI+ Lq Ote100268410021|100268410021 320 LFHKLREIIPNS----DQKRDKASFLLEVIEYIQFLQ 352 699********9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.6E-18 | 260 | 277 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.49E-8 | 260 | 355 | No hit | No description |
SuperFamily | SSF47459 | 8.24E-10 | 320 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-5 | 320 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-18 | 321 | 374 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
MLDLGICGPS LGLADISKFK KPQSLISFCQ NVGGYLKTHD FLQPLEREGK NVTTTKEDIK 60 AGLAAVDRPS VPAPPASVEH ILPGGIGTYS ISYFNQMALK PEGSLFTAQP SSTARNDENS 120 NCTSYPGGSF TLWDESAIKK GKTGKENISV ERHILREAGV NVVGGQWTSF LEKPSRSSSN 180 HRHNATNFSS LSSSQPSSSQ KNQSFMDMMM TSTKNDLXXX XXXXXXXFMS IKKEPSCHLK 240 GNLSVKVEAK TIDQKPNTPR SKHSATEQRR RSKINDRHVY QPPQFEVQDF DQLSEFASVF 300 PCYIMSSYHH PESFLGLFTL FHKLREIIPN SDQKRDKASF LLEVIEYIQF LQEKVNRYEN 360 SYNVWNQESS KMMHWQRNCH INEGVIDRTV GVSSDSAPTA LVFGKKFEEN KGGVSPSLPT 420 SGQNLVDSDL SSDTTLRERV QPPILTTKGL ANILSLGSIS VPPKLGSEVD KSTTRPQSQL 480 LRSCNKMTEQ EVSIESGTIN ISSVYSQG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078682.1 | 0.0 | transcription factor BIM1 isoform X1 | ||||
TrEMBL | A0A4D8ZFI0 | 0.0 | A0A4D8ZFI0_SALSN; Uncharacterized protein | ||||
STRING | Migut.D01611.1.p | 1e-160 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3969 | 23 | 45 |