PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100267120021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | AP2 | ||||||||
Protein Properties | Length: 307aa MW: 34946.5 Da PI: 9.5176 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.5 | 1.2e-16 | 65 | 124 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g Ote100267120021|100267120021 65 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 124 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 24.8 | 5.5e-08 | 167 | 234 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng............krkrfslgkfgt.aeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + n+ +k sl +f+ eeAa+a++ a+ k++g Ote100267120021|100267120021 167 SIYRGVTRHHQHGRWQARIGRVAGNKdlylgtfivvmlLHKAESLDNFDCtQEEAAEAYDIAAIKFRG 234 57*****************997777788888888754444999******9899**********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.0E-13 | 65 | 124 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-17 | 65 | 134 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.30E-21 | 65 | 132 | No hit | No description |
SMART | SM00380 | 3.4E-29 | 66 | 138 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.203 | 66 | 132 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-16 | 66 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-5 | 67 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-5 | 114 | 134 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.61E-20 | 167 | 244 | No hit | No description |
SuperFamily | SSF54171 | 5.1E-11 | 167 | 244 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 13.907 | 168 | 242 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.5E-25 | 168 | 248 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-4 | 168 | 199 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-6 | 217 | 242 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MVESLSLSMS PGSQSSCITA SRQISPTETA TECIAMETKK RGAEKLGQKQ TVHRKSIDTF 60 GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQTRKGRQV YLGGYDMEEK AARAYDLAAL 120 KYWGPSTHIN FPLENYHQEI EDMKKMSRQE YVAHLRRKSS GFSRGASIYR GVTRHHQHGR 180 WQARIGRVAG NKDLYLGTFI VVMLLHKAES LDNFDCTQEE AAEAYDIAAI KFRGVNAVTN 240 FDISRYDVEK IMASNTLPAG EIARRNKEEK PIAEEVILES PTPQKWGRVE QRNVCDWKMV 300 VHDGGAV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011074331.1 | 1e-172 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-140 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A0G2SJF0 | 1e-174 | A0A0G2SJF0_SALMI; AP12/EREBP Transcription Factors | ||||
STRING | EOY15653 | 1e-162 | (Theobroma cacao) | ||||
STRING | XP_009610222.1 | 1e-162 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2074 | 24 | 60 |