PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100267040051
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 289aa    MW: 32467.5 Da    PI: 7.1315
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100267040051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.4e-1371122155
                                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +r++h ++Er+RR ++N+ ++ Lr+l+P +   + ++ + a+i+  A+e++k+L+
  Ote100267040051|100267040051  71 QRMTHIAVERNRRXQMNEHLAVLRSLMPDS---YVQRGDQASIVGGAIEFVKELE 122
                                   79****************************...9******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-1669141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.94E-1269126No hitNo description
Gene3DG3DSA:4.10.280.102.2E-1369124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.05370121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-1171122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-976127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MALEAISSTD LLNFIIYDSN NASAAAATFA CHNHSSPQEI PPPPPESAVP GRKKRRRRPK  60
LCKNKEEAES QRMTHIAVER NRRXQMNEHL AVLRSLMPDS YVQRGDQASI VGGAIEFVKE  120
LEHILQSLEA KKFALLEHAN VTNKEHQNYH HHQTNEDDQK QDLGESSPFA QFFAFPQFSC  180
THSQLGHKYT SQSKAAVADI EVTLIETHAN IRILSRRRVR QLLKIASAFQ SVFLTILHLN  240
VTTLDSFVLY SISAKVEEGC QLNSADDIAG AVHHMLRIIE EEALLGCHT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070274.11e-138transcription factor bHLH71
SwissprotQ9C7T45e-76BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0H3YB551e-148A0A0H3YB55_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.O00536.1.p1e-125(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56322436
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]