PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100266180021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB_related | ||||||||
Protein Properties | Length: 261aa MW: 29268.8 Da PI: 4.7029 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.1 | 1.8e-17 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed l+++++ +G g+W++ ar g++Rt+k+c++rw++yl Ote100266180021|100266180021 23 RGPWTVDEDFTLINYIAHHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 70 89********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.22 | 18 | 74 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-20 | 20 | 73 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-14 | 22 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-16 | 23 | 70 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.8E-21 | 24 | 97 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.39E-12 | 25 | 70 | No hit | No description |
PROSITE profile | PS50090 | 3.996 | 71 | 108 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-5 | 74 | 96 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 46 | 75 | 195 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MDHHQDGKAS TNYSDEDLLE LRRGPWTVDE DFTLINYIAH HGEGRWNSLA RSAGLKRTGK 60 SCRLRWLNYL RPDVRRGNIT LEEQLLILEL HSRWGNSKQF QDTMRYLWMP RLVERIQASA 120 NAGGGDGASS STPTYHLTNT NLDTRLAQIA PPHSTIGGGG VHTFTPENSS AAASSDSFGT 180 PVSDLTDCYN NYPANQDYYP ANQFGNYGDQ SLTSPTVGYF NQGLDFVEQN GQWAMDGEDV 240 SDSLWNVDDM WFSQQQFNSN A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-13 | 20 | 96 | 24 | 99 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071358.1 | 1e-102 | transcription factor MYB108 | ||||
Swissprot | Q9FGY3 | 6e-54 | MYB78_ARATH; Transcription factor MYB78 | ||||
TrEMBL | A0A2G9HKQ1 | 1e-102 | A0A2G9HKQ1_9LAMI; Transcription factor, Myb superfamily | ||||
STRING | Migut.G00025.1.p | 7e-87 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1397 | 23 | 75 |
Publications ? help Back to Top | |||
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