PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100264810051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family M-type_MADS
Protein Properties Length: 256aa    MW: 30021.5 Da    PI: 9.8793
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100264810051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.97.5e-15345244
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                                   i+n+  r+ t+ kR++g++ K +E  +LCd+++++ii++++g
  Ote100264810051|100264810051  3 LINNEKSRNATYKKRKEGLIRKLNEFTTLCDVKACIIIYGPQG 45
                                  699**************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.984145IPR002100Transcription factor, MADS-box
CDDcd002665.96E-16171No hitNo description
SMARTSM004326.3E-7153IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.05E-16171IPR002100Transcription factor, MADS-box
PfamPF003192.4E-15445IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MKLINNEKSR NATYKKRKEG LIRKLNEFTT LCDVKACIII YGPQGATEPE IFPQNPHQLR  60
RIIDIYKSKN KDSGIKTYGI ADFFHDREKK IEEELIKLRR KNLESKYPTW PHLLNIATEA  120
QLREFGILLS NKLEHVRATI EFLRRKKQTA AISVDSVNVD SHNSMMMVLM NESASTSANI  180
HLQRQVFFES XXXXXXXXXX XXXXXXYLLS AVVPPQMLFS HQEDFSFQYE MKNKTPSDQN  240
SKVEEWSERD RLRVLK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552001.13e-62agamous-like MADS-box protein AGL14
RefseqXP_022861491.12e-62MADS-box protein defh21-like
TrEMBLA0A2G9HM508e-66A0A2G9HM50_9LAMI; MADS box transcription factor
STRINGMigut.B00770.1.p6e-69(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253