PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100264140001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 173aa MW: 19275.9 Da PI: 10.6849 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 105.5 | 2.7e-33 | 5 | 104 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+k+ tpsdv+k++rlv+pk++ae+h +g++ +++ l +ed+ g++W+++++y+++s++yvltkGW++Fvk++ L++g Ote100264140001|100264140001 5 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqNGNSSKGVLLNFEDSGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLRAG 85 89****************************888899********************************************* PP -EEEEEE-SSSEE..EEEE CS B3 78 DfvvFkldgrsefelvvkv 96 D+v F+++ +++l++ + Ote100264140001|100264140001 86 DIVFFQRSAAADGQLYIDW 104 ******9887888888876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-41 | 2 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.11E-29 | 4 | 93 | No hit | No description |
SuperFamily | SSF101936 | 1.31E-30 | 4 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.6E-30 | 5 | 105 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.4E-22 | 5 | 108 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 15.002 | 5 | 108 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 173 aa Download sequence Send to blast |
REQLFEKAVT PSDVGKLNRL VIPKQHAEKH FPLQNGNSSK GVLLNFEDSG GKVWRFRYSY 60 WNSSQSYVLT KGWSRFVKEK SLRAGDIVFF QRSAAADGQL YIDWKTRNNG INSPSPAAAG 120 RVQTVRLFGV NILEVPRNGG GAAADSCSGK RMMEMEILGL NNSNKKQRVV DAL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 1e-57 | 2 | 108 | 11 | 118 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077234.1 | 2e-94 | AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
Swissprot | P82280 | 2e-64 | RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2 | ||||
TrEMBL | A0A2G9I1N7 | 6e-92 | A0A2G9I1N7_9LAMI; Uncharacterized protein | ||||
STRING | Migut.L01094.1.p | 9e-86 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2958 | 24 | 53 |