PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100264090021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 235aa MW: 27734.3 Da PI: 7.3403

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100264090021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.7	1.8e-56	8	137	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknrat 78 +ppGfrFhPtdeelv++yL++k+++++++l +vik+vd+yk+ePwdL++ ++ + e++ewyfFs++dkky+tg+r+nrat Ote100264090021\|100264090021 8 VPPGFRFHPTDEELVDYYLRRKISSRSIDL-DVIKDVDLYKIEPWDLQElcRIGSeEQNEWYFFSHKDKKYPTGTRTNRAT 87 69**************************.9***********954555552556****************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++g+Wkatg+dk+++s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle Ote100264090021\|100264090021 88 AAGFWKATGRDKAIYS-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 137 ************.8899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.67E-62	5	157	IPR003441	NAC domain
PROSITE profile	PS51005	60.269	8	157	IPR003441	NAC domain
Pfam	PF02365	2.5E-29	9	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MMNTFTHVPP GFRFHPTDEE LVDYYLRRKI SSRSIDLDVI KDVDLYKIEP WDLQELCRIG 60 SEEQNEWYFF SHKDKKYPTG TRTNRATAAG FWKATGRDKA IYSKHDLIGM RKTLVFYKGR 120 APNGQKSDWI MHEYRLETDE NGTPQEEGWV VCRVFKKRIA TTQKMGDHDS PVWYDDHVSF 180 MPDMESPKQH SYNPNLSYNS NYPNYTNSCK KEMPPLHYAI PPDHFLQLPL LESPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	8e-51	4	164	16	174	NAC domain-containing protein 19
3swm_B	8e-51	4	164	16	174	NAC domain-containing protein 19
3swm_C	8e-51	4	164	16	174	NAC domain-containing protein 19
3swm_D	8e-51	4	164	16	174	NAC domain-containing protein 19
3swp_A	8e-51	4	164	16	174	NAC domain-containing protein 19
3swp_B	8e-51	4	164	16	174	NAC domain-containing protein 19
3swp_C	8e-51	4	164	16	174	NAC domain-containing protein 19
3swp_D	8e-51	4	164	16	174	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076335.1	1e-148	NAC domain-containing protein 7
Swissprot	Q9FWX2	1e-121	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A2G9GZR1	1e-147	A0A2G9GZR1_9LAMI; Uncharacterized protein
STRING	EOY22909	1e-143	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]