PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100263650051
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family LBD
Protein Properties Length: 162aa    MW: 18109.7 Da    PI: 7.3699
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100263650051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.26.9e-4471061100
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                                   +Ca+Ck+lrr+CakdC+++pyfp ++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+
  Ote100263650051|100263650051   7 PCASCKLLRRRCAKDCIFSPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVDQRGDAVSSLVYEANARMRDPVYGCVGAIS 87 
                                   7******************************************************************************** PP

                        DUF260  82 klqqqleqlkaelallkee 100
                                    lq+q++ql+ +la++++e
  Ote100263650051|100263650051  88 YLQNQVSQLQMQLAVAQAE 106
                                   ***************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.5216107IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-437104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MGVGSSPCAS CKLLRRRCAK DCIFSPYFPP DDPHKFAIVH KVFGASNVSK MLQELPVDQR  60
GDAVSSLVYE ANARMRDPVY GCVGAISYLQ NQVSQLQMQL AVAQAEILCI QMQQEQHQQP  120
LMMPNQDEKS LLQHYLAFAS TNSSSSTNNV MQDPLKRESL WT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-4721087112LOB family transfactor Ramosa2.1
5ly0_B1e-4721087112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023728886.15e-91LOB domain-containing protein 12-like
SwissprotQ8LBW32e-78LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A2G9I6Q44e-93A0A2G9I6Q4_9LAMI; Uncharacterized protein
STRINGVIT_06s0004g07200.t014e-89(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]