PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100263640091
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 581aa    MW: 64182.5 Da    PI: 9.0192
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100263640091genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.51.2e-27305363160
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                   ldDgynWrKYGqK vkg++f rsYYrCt+ +C++kk+ve+s+  + + +i Y g+H+h+k
  Ote100263640091|100263640091 305 LDDGYNWRKYGQKLVKGNKFVRSYYRCTHLNCQAKKQVEKSH-GGCISDINYLGNHHHQK 363
                                   59****************************************.9**************85 PP
2WRKY99.42.3e-31477535159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ++Dg +WrKYGqK vkg+++prsYYrC+s+gCp+kk+ver++++pk+v++tYeg+H+he
  Ote100263640091|100263640091 477 VNDGNRWRKYGQKLVKGNPNPRSYYRCSSTGCPAKKHVERASHNPKLVITTYEGKHHHE 535
                                   58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-23299365IPR003657WRKY domain
PROSITE profilePS5081120.92300364IPR003657WRKY domain
SuperFamilySSF1182904.05E-22304364IPR003657WRKY domain
SMARTSM007742.3E-30305363IPR003657WRKY domain
PfamPF031062.2E-20306362IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-33464537IPR003657WRKY domain
SuperFamilySSF1182909.55E-28469537IPR003657WRKY domain
PROSITE profilePS5081134.819472537IPR003657WRKY domain
SMARTSM007742.8E-35477536IPR003657WRKY domain
PfamPF031065.0E-25478534IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MGAVSSKRIA SESGELENRA RANLPSDILT KSDMLHTKSH LDVNKERERQ KQKLDTKQEQ  60
LLLHPRQTSG IDCHSPESLE EGGVRSCKNV NEKDSDVLMQ ISNSNPAIPA QVSNPVPVSH  120
AMEDSSKIPK DEERTTEKLE AVGGTSIPAQ SVNGVPASLS NEQMLIKNSQ SGKILEKLQP  180
RRIPDAVGYG SQPDQLTITS AHPEKNCATE AEPRAHNPRP SSHALMSKEE KVTNTKQELI  240
MKNSVQASSL SIGVPVPHLG QESNTYSKML KKVEKLQPRR NPDPIVQESK SDVGTTPSKT  300
PEKGLDDGYN WRKYGQKLVK GNKFVRSYYR CTHLNCQAKK QVEKSHGGCI SDINYLGNHH  360
HQKPQHSPQA TSTLQERSPE MPIASTSKTN FEVICKQSGL DQHMALTETS PQSTQGRNDE  420
GLSGAVSCSK NNTRDVDDFP ESKRQKRDTS SVDEDVGSRS SSDSRHVVQT LSEVDLVNDG  480
NRWRKYGQKL VKGNPNPRSY YRCSSTGCPA KKHVERASHN PKLVITTYEG KHHHEIPTSS  540
TVSQSTSRVD SNMMKPNGEL SSKPEDKSPV SREIVVHVTA N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-31464537174WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100622.11e-175WRKY transcription factor 1 isoform X1
TrEMBLA0A4D8ZMA90.0A0A4D8ZMA9_SALSN; WRKY transcription factor 33
STRINGPGSC0003DMT4000741587e-88(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45582242