PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100263640041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 401aa    MW: 45000.6 Da    PI: 6.1796
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100263640041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS49.48.4e-16141210170
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets 70 
                                   l++lL++cA+avs++d  +aq+l+ +l++l+s +g+p+qRl ay++e+L a ++ s+s++yk+l+ +e +
  Ote100263640041|100263640041 141 LKQLLMACAKAVSNNDPIMAQWLIPELRQLVSVSGEPIQRLGAYMLEGLVALMTASGSSIYKSLKLREPA 210
                                   689*************************************************************999887 PP
2GRAS59.66.5e-19238300120180
                          GRAS 120 sqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                                   +qG QW++L+qa+a+Rp+gpp++R+Tg+++ +s   +   l  +g+rLak+A++++vpf f+v
  Ote100263640041|100263640041 238 GQGSQWIPLIQAFAARPGGPPHIRVTGIDDVASAyaRGGGLDIVGRRLAKLAQSFKVPFTFHV 300
                                   79****************************888888999**********************97 PP
3GRAS108.11.2e-33303401275374
                          GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                                   lp+e++eri+vE+++l+r++vn++aceg er+erhe  +kWr+r+++aGF+p pls+ +++++k+ll+++ s+ y++ee++
  Ote100263640041|100263640041 303 LPAEHKERINVEQHCLARDVVNIIACEGVERVERHEPHGKWRSRFTMAGFSPSPLSSLVNTTIKTLLKNYCSR-YSLEERD 382
                                   7999*******************************************************************88.******* PP

                          GRAS 356 gslvlgWkdrpLvsvSaWr 374
                                   g+l+lgW +r Lv++SaW+
  Ote100263640041|100263640041 383 GALFLGWLNRDLVTASAWK 401
                                   ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.219115401IPR005202Transcription factor GRAS
PfamPF035142.9E-13141210IPR005202Transcription factor GRAS
PfamPF035142.3E-16238300IPR005202Transcription factor GRAS
PfamPF035144.3E-31303401IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MSNTWYYQPV QKLEAYSLQQ CQPLNQQWSY NNISNGNGYS ILVSQDRYCT LESSTLTTYN  60
SPSTVSFSPN ESLFSQQETN EPCLVEDVDE LRHKLEELEN AMFRPDLDVS ETYDGSVPSM  120
LASAEMDSWR QLMEFVPRGD LKQLLMACAK AVSNNDPIMA QWLIPELRQL VSVSGEPIQR  180
LGAYMLEGLV ALMTASGSSI YKSLKLREPA SFELLSYMQX XXXXXXXXXR SARISSSGQG  240
SQWIPLIQAF AARPGGPPHI RVTGIDDVAS AYARGGGLDI VGRRLAKLAQ SFKVPFTFHV  300
APLPAEHKER INVEQHCLAR DVVNIIACEG VERVERHEPH GKWRSRFTMA GFSPSPLSSL  360
VNTTIKTLLK NYCSRYSLEE RDGALFLGWL NRDLVTASAW K
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022872530.11e-150scarecrow-like protein 21 isoform X2
SwissprotQ9LDL78e-74PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A4D8ZUX11e-143A0A4D8ZUX1_SALSN; Uncharacterized protein
STRINGVIT_12s0057g00560.t011e-110(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]