PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100263460051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ARR-B
Protein Properties Length: 666aa    MW: 72857 Da    PI: 5.5009
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100263460051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like62.39.2e-20201244145
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 
                                   kpr++W+ eLH++Fv av+qL G+ekA+Pk+il++m+v+gLt+e+
  Ote100263460051|100263460051 201 KPRVVWSIELHRKFVAAVNQL-GIEKAVPKRILDMMNVEGLTREN 244
                                   79*******************.********************987 PP
2Response_reg48.64.3e-17191161100
                                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTT CS
                  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekdpDlillDiempgmdGlellkeireeepklpiivvtahg 81 
                                   vl vdD+p+ ++ll+++l+k +y + + +              +Dl++ D+ mp+mdG++ll+     e++lp+i+++a++
  Ote100263460051|100263460051  19 VLAVDDDPTCLKLLETLLRKCQY-NGKDCIAXXXXXXXXXXXXFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANS 97 
                                   799********************.5555555555566666666*******************87754.558********** PP

                                   THHHHHHHHHTTESEEEES CS
                  Response_reg  82 eeedalealkaGakdflsK 100
                                   +++++ + +  Ga d+l+ 
  Ote100263460051|100263460051  98 DPKLVMKGVTHGACDYLVX 116
                                   ****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363927.2E-1281655IPR017053Response regulator B-type, plant
SuperFamilySSF521725.12E-2416146IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.0E-3016154No hitNo description
SMARTSM004481.1E-1217127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011026.56918131IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.6E-1519115IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.13E-1720134No hitNo description
SuperFamilySSF466891.38E-11198252IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-20198253IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-15201244IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MIVEEIRGDA DNFPAGLRVL AVDDDPTCLK LLETLLRKCQ YNGKDCIAXX XXXXXXXXXX  60
FDLVISDVHM PDMDGFKLLE LVGLEMDLPV IMLSANSDPK LVMKGVTHGA CDYLVXXXXX  120
VRIEELRNIW QHVIRRKKFD SKNQNRSSDQ DKVHQASGED LGYPLAGQTD HNGKFNRKRK  180
DDDDDSEDNG HECDDPGTQK KPRVVWSIEL HRKFVAAVNQ LGIEKAVPKR ILDMMNVEGL  240
TRENKYRLYL KRISTVASQQ ANMAAALGVK DAPFMHTGSF DGLGDFRTLG GARLPHVPLS  300
PYTNGGMLGR LNSPGNANLR NLTPSSLLVQ PSQAQNLSNS INSLGKMHLV APNPSQNPSL  360
FQDIQPPCGL DQLQQNKVGA GAANLNAINN SMMFSNNLLN SSTRNPPVRN GNSQQAPNGG  420
GFGNQSADNM ASFTSESFNR GVSGSSNLLD PAKCNDNWQN TVESSNMHAN PLLSAEPFRS  480
QFLLNGSRDS NSSNGPYAQN NPIGLSSGVA LPPFEYPRER QCQVGSRGDF QSMNQVLGQS  540
WVEQRQNYAH SSQFPANGIV SNMGRSFDQG SGVLNQNMDT HIGGRSTGSA SALMQQDKDG  600
ELVTESISRS NEDFLVEQST LQGGFAPQGY DSLDELVNAM IKRERDETAS NADFGGLDGY  660
SFGPVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-19199254364ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078598.10.0two-component response regulator ARR12
TrEMBLA0A4D8ZNJ20.0A0A4D8ZNJ2_SALSN; Two-component response regulator ARR-B family
STRINGXP_009757804.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458