PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100263050121
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 309aa    MW: 35458.2 Da    PI: 6.5656
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100263050121genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-171461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl
  Ote100263050121|100263050121 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61
                                  788*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-25664IPR009057Homeodomain-like
PROSITE profilePS5129423.67965IPR017930Myb domain
SMARTSM007171.9E-121363IPR001005SANT/Myb domain
PfamPF002492.3E-151461IPR001005SANT/Myb domain
SuperFamilySSF466891.45E-221690IPR009057Homeodomain-like
CDDcd001672.93E-111761No hitNo description
PROSITE profilePS500906.27262111IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.7E-106590IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TPEEEKLIIS LHGAVGNRWA HXXXXXXXXX XXXXXXXXXS WIKKKIRKPS  120
SSSSTTSTQK SDQSHHFTFT QNQQLDLFNQ DHLSTKSQVH QDITLFPLPS SSSFMFEINP  180
SLEAPSRIDH IFQENTALSS ETWQLQQRQH HDHVVQQGEM VQYTSAMTPL IDNLENILVP  240
IEVQNSCGIN VGGSNVDCMQ RNDINEWVDT QQCPNYFFWD QAEGQLGGEE IIPTNSNMGT  300
IMSAFPSSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-13149027102MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074190.11e-139transcription repressor MYB6
TrEMBLA0A2G9HK991e-131A0A2G9HK99_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.E01206.1.p1e-121(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA124391722