PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100262610031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | NF-YA | ||||||||
Protein Properties | Length: 206aa MW: 23373.5 Da PI: 10.1993 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 89.7 | 4e-28 | 70 | 124 | 3 | 58 |
CBFB_NFYA 3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p++VNaKQy++I++RR+kRa+++ +++l k rkpylh SRh hA+rRpRg+gGrF Ote100262610031|100262610031 70 PIFVNAKQYNGIMRRRKKRAQADLHNNL-LKIRKPYLHLSRHLHAKRRPRGNGGRF 124 9***************************.9*************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.4E-27 | 66 | 127 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 30.257 | 67 | 127 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.0E-24 | 70 | 124 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.9E-19 | 70 | 92 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.9E-19 | 101 | 124 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MGKFHRYLLP PWIIEGILSL DVDIHCKWKM VQICGKYPYP DQCYGVYSSY GPQFGGRMML 60 PLNFGSDGGP IFVNAKQYNG IMRRRKKRAQ ADLHNNLLKI RKPYLHLSRH LHAKRRPRGN 120 GGRFLNTKSS TAEATKKIRS ESSSPTGSEV SSDHEAFPDK AIGNDAALDL FQLNNLHHSF 180 HHPFPDGPGX XXXXXXXXAT ENYLKV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-12 | 70 | 132 | 4 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094246.1 | 9e-53 | nuclear transcription factor Y subunit A-10 | ||||
Refseq | XP_020553756.1 | 9e-53 | nuclear transcription factor Y subunit A-10 | ||||
Refseq | XP_020553757.1 | 9e-53 | nuclear transcription factor Y subunit A-10 | ||||
TrEMBL | A0A2Z4K5F5 | 1e-57 | A0A2Z4K5F5_TECGR; NF-Y2 protein | ||||
STRING | Migut.J00688.1.p | 7e-48 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3706 | 23 | 47 |