PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100262240031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 316aa MW: 35372.1 Da PI: 8.1402

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100262240031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.2	3.3e-14	112	158	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN++ L+ l+P++ K +Ka++L A++Y+k+Lq Ote100262240031\|100262240031 112 VHNLSEKRRRSRINEKKKALQNLIPNS-----NKTDKASMLDDAIDYLKQLQ 158 6***********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	7.2E-18	105	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.71E-18	105	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.104	108	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.28E-13	111	162	No hit	No description
Pfam	PF00010	7.9E-12	112	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.3E-16	114	163	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MRFLAFSILH QILLPSSSSS SHSVLNRQPL LPTSHHVAAE QQVPEISTFN SCSTCSFAAA 60 TNVSPSSVGN LDNETDDCEY ESVEAVEALM AESAAKSAPR RCSSKRSRAA EVHNLSEKRR 120 RSRINEKKKA LQNLIPNSNK TDKASMLDDA IDYLKQLQLQ VQANVDNEKW IKPLSYLPAE 180 YAATAQSTFS NKDSLLRLPE NFVKQEHTSN FSSMIHKTSA DAESYLLQHQ LGAFQLPRSF 240 KKETVLPLVE QDCPQRAKAR CYLIPVEEQT SRLKDDILES RADILLGSLI LKILAQNSLI 300 TYDINIVARK NFHAQK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099122.1	5e-53	transcription factor SPATULA
TrEMBL	A0A0H3YC58	2e-81	A0A0H3YC58_SALMI; Basic helix-loop-helix transcription factor

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9850	22	27