PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100261710021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 283aa    MW: 31953.5 Da    PI: 4.8177
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100261710021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.41.5e-1487138155
                                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++++k+L+
  Ote100261710021|100261710021  87 QRMTHIAVERNRRRQMNDYLAILRSLMPPS---YAQRGDQASIVGGAINFVKELE 138
                                   79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-1785150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-1385142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.51E-1485142No hitNo description
PROSITE profilePS5088815.76486137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-1287138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-1092143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEAAIYQQDP LFIYGCKDYD FSTEFSGFGL ENGGGDQNLI GYWDSPPSSV SPEETFXXXX  60
XXXXXXXXXX XXXXSKSMKN KEEMENQRMT HIAVERNRRR QMNDYLAILR SLMPPSYAQR  120
GDQASIVGGA INFVKELEQL VQFLEAYKLT DQQKQPVAAA ATDGAFSDFF TFPQYSRRPS  180
GGDAAEVVAE RRWGVAEIEV TMAESHANIK ILSKRRPKQL LKMVAGFHSI CLNILHLNIT  240
TVDQSVLYSF SVKVEDECEL NTVNDIARAM HEMVATIQQE STS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100183.21e-111LOW QUALITY PROTEIN: transcription factor bHLH96-like
SwissprotQ9C7T41e-82BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2G9I4C81e-110A0A2G9I4C8_9LAMI; Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1
STRINGXP_010266731.13e-96(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]