PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100261470091 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB_related | ||||||||
Protein Properties | Length: 179aa MW: 20531.1 Da PI: 5.6055 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.6 | 3.4e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l v ++G ++W + + g+ R++k+c++rw +yl Ote100261470091|100261470091 14 KGAWSKEEDHILRSFVLEFGHHNWQRLPLLAGLARCGKSCRLRWMNYL 61 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.9E-19 | 8 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.727 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 3.2E-9 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.42E-19 | 15 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.66E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS50090 | 4.066 | 62 | 88 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-8 | 65 | 88 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MVKPPTFDSN GMKKGAWSKE EDHILRSFVL EFGHHNWQRL PLLAGLARCG KSCRLRWMNY 60 LKPGLKRGKI TKQEDELIIK LHDQLGRNSR VTANLEEENV ECMQSLTRDQ DDVVSIGVGN 120 GQTFLSQLDV DSGMFHEMQY DHKSTFMNSS DSGASFCNSS RADFWSEPFE EDTLEIVLW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012852362.1 | 2e-47 | PREDICTED: transcription factor MYB34-like | ||||
Swissprot | Q9LTC4 | 5e-31 | MYB15_ARATH; Transcription factor MYB15 | ||||
STRING | Migut.M00366.1.p | 8e-47 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |