PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100261180031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bZIP
Protein Properties Length: 252aa    MW: 27502.5 Da    PI: 4.9765
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100261180031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.52.2e-11931361659
                                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                        bZIP_1  16 AArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                                   +ArrsR+RK+a ++ Le+ v++L +eN++L k+l+  +++ ++ 
  Ote100261180031|100261180031  93 SARRSRRRKQAHLADLEQQVEQLRGENSTLFKQLSDATQQFKES 136
                                   9******************************8888777776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.3E-1181142IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.81885135IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-885133No hitNo description
PfamPF001701.5E-886134IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1709.5E-893134No hitNo description
CDDcd147021.23E-1693133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEIRRGLSGP NALAEPPVWS QNVQVPIESQ SSICVDSPTS AYTSKGADNQ AVGASSGSSH  60
EQSDEEDIEI EGGSCGQSTN PVDIKRIKRY IYSARRSRRR KQAHLADLEQ QVEQLRGENS  120
TLFKQLSDAT QQFKESTTNN RVLRSDVEAL RAKVRLAEDM VARGSLTSSL SHLLQNYLNT  180
PQDYXXXXXX XXXXXNHSIP PLMGGRGDDN SPYSGISGSG VGIEPESFSS NGVVGDPAMW  240
AWETQVDPAV SK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075979.13e-96basic leucine zipper 9-like
SwissprotQ6ETX09e-58RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
TrEMBLA0A4D9A2D31e-101A0A4D9A2D3_SALSN; Uncharacterized protein
STRINGMigut.E01416.1.p1e-94(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81392229
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH
    The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development.
    Plant Cell, 1994. 6(9): p. 1277-87
    [PMID:7919992]